RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ICE2Q659A1 982 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 TDRD7Q8NHU6 1098 aaKnown RBP7.2□□□□□ -1.26
SCN1A-204ENST00000423058 AP1M1Q9BXS5 423 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 MRPS26Q9BYN8 205 aaKnown RBP7.2□□□□□ -1.26
SCN1A-204ENST00000423058 OSBPL6Q9BZF3 934 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 ARHGEF38Q9NXL2 777 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 RPS6KB2Q9UBS0 482 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 SPHKAPQ2M3C7 1700 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 C6orf222P0C671 652 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-204ENST00000423058 VCAM1P19320 739 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 MICALL2Q8IY33 904 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 PTPRN2Q92932 1015 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 OLFM3Q96PB7 478 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 COLEC11Q9BWP8 271 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 NFKBIZQ9BYH8 718 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 STMN3Q9NZ72 180 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 APPL1Q9UKG1 709 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 IRF1P10914 325 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 CETPP11597 493 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 IFNAR1P17181 557 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 PTK6Q13882 451 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 RPAINQ86UA6 219 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 ZBED8Q8IZ13 594 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 GRAMD1AQ96CP6 724 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 CMTM5Q96DZ9 223 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 TUFT1Q9NNX1 390 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 SYBUQ9NX95 663 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 NCAPD2Q15021 1401 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 NUP153P49790 1475 aaKnown RBP7.2□□□□□ -1.26
SCN1A-204ENST00000423058 CDC42BPBQ9Y5S2 1711 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 CARNS1A5YM72 827 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 DCDC2CA8MYV0 355 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 DEAF1O75398 565 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-204ENST00000423058 TXNP10599 105 aaKnown RBP7.2□□□□□ -1.26
SCN1A-204ENST00000423058 ALOX15P16050 662 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-204ENST00000423058 USP39Q53GS9 565 aaKnown RBP7.2□□□□□ -1.26
SCN1A-204ENST00000423058 PID1Q7Z2X4 250 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 SRLQ86TD4 932 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 PPM1NQ8N819 430 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 ZNF513Q8N8E2 541 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-204ENST00000423058 OTUD7AQ8TE49 926 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-204ENST00000423058 USP44Q9H0E7 712 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 PARVBQ9HBI1 364 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 SPASTQ9UBP0 616 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 PCDHA10Q9Y5I2 948 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 CHD1O14646 1710 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 ODC1P11926 461 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 USP11P51784 963 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 SNAP25P60880 206 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 CDH18Q13634 790 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 C4orf22Q6V702 233 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 BRINP3Q76B58 766 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 FAM9CQ8IZT9 166 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 CEP70Q8NHQ1 597 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 SH3RF3Q8TEJ3 882 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-204ENST00000423058 SLC20A1Q8WUM9 679 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 TMEM169Q96HH4 297 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 LMBRD1Q9NUN5 540 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 STOML1Q9UBI4 398 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 QRICH2Q9H0J4 1663 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 KCNN4O15554 427 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 RASSF9O75901 435 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 GUCY2CP25092 1073 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 NLRP11P59045 1033 aaKnown RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 PTH1RQ03431 593 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 PIGHQ14442 188 aaPredicted RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 CNGA3Q16281 694 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 NBPF9Q3BBW0 867 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 MGAT5BQ3V5L5 792 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 LUZP2Q86TE4 346 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 ADCK1Q86TW2 530 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 ARRDC4Q8NCT1 418 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 FAM162AQ96A26 154 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 FAM161BQ96MY7 647 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 SLC16A4O15374 487 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 YWHABP31946 246 aaKnown RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 FNTAP49354 379 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 ACTR2P61160 394 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 SPP2Q13103 211 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 MTA1Q13330 715 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 CAMK2GQ13555 558 aaPredicted RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 COG2Q14746 738 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 FAM47EQ6ZV65 393 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 LINC00523Q86TU6 105 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 HIPK4Q8NE63 616 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 EAF2Q96CJ1 260 aaPredicted RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 EDC3Q96F86 508 aaKnown RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 AGBL1Q96MI9 1066 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 CCDC3Q9BQI4 270 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 LXNQ9BS40 222 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 C1QTNF7Q9BXJ2 289 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 PRRG3Q9BZD7 231 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 ZNF229Q9UJW7 825 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 NOVA2Q9UNW9 492 aaKnown RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 POTEFA5A3E0 1075 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 PSMD12O00232 456 aaPredicted RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 SLC25A27O95847 323 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 EPB42P16452 691 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 ZNF24P17028 368 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms