RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 LARP4Q71RC2 724 aaKnown RBP eCLIP5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 BEND5Q7L4P6 421 aa5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 FAM90A1Q86YD7 464 aa5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 SYTL1Q8IYJ3 562 aa5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 NKAPQ8N5F7 415 aaKnown RBP5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 PAF1Q8N7H5 531 aa5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 OR5M3Q8NGP4 307 aa5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 IPCEF1Q8WWN9 437 aaPredicted RBP5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 KCNN1Q92952 543 aa5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 NMD3Q96D46 503 aaKnown RBP5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 TMEM41AQ96HV5 264 aa5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 MRGPRX1Q96LB2 322 aa5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 SGPP1Q9BX95 441 aa5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 PACSIN1Q9BY11 444 aa5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 TRIM54Q9BYV2 358 aa5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 GCM1Q9NP62 436 aa5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 ADAM29Q9UKF5 820 aa5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 PCDHA6Q9UN73 950 aa5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 MAGED2Q9UNF1 606 aaPredicted RBP5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 MED16Q9Y2X0 877 aa5.72□□□□□ -1.49
HMGB3P18-201ENST00000406327 PMS2P1A4D2B8 440 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 TBC1D4O60343 1298 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 PLA2G1BP04054 148 aaKnown RBP5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 THP07101 528 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 RAP2AP10114 183 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 ALAS1P13196 640 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 ALOX15P16050 662 aaPredicted RBP5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 PCSK1P29120 753 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 CSF2RBP32927 897 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 RRADP55042 308 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 NPEPPSP55786 919 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 SOX8P57073 446 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 RAB32Q13637 225 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 BLMHQ13867 455 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 TRIM14Q14142 442 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 FAM47AQ5JRC9 791 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 ZNF648Q5T619 568 aaPredicted RBP5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 CNKSR3Q6P9H4 555 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 RALYLQ86SE5 291 aaKnown RBP5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 PPP1R3BQ86XI6 285 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 COL23A1Q86Y22 540 aaPredicted RBP5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 CMTM4Q8IZR5 234 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 SDR16C5Q8N3Y7 309 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 LILRA3Q8N6C8 439 aaPredicted RBP5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 FANCBQ8NB91 859 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 MDM1Q8TC05 714 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 DDX17Q92841 729 aaKnown RBP5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 TNPO1Q92973 898 aaKnown RBP5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 KIAA1191Q96A73 305 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 IQCDQ96DY2 449 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 KIAA1683Q9H0B3 1180 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 SIK2Q9H0K1 926 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 AGO4Q9HCK5 861 aaKnown RBP5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 LUZP4Q9P127 313 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 SRRDQ9UH36 339 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 ANAPC4Q9UJX5 808 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 GTF2A1LQ9UNN4 478 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 ACTL7AQ9Y615 435 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 USP19O94966 1318 aa5.71□□□□□ -1.5
HMGB3P18-201ENST00000406327 A0A087WV62 115 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 A0A1W2PPC4 97 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 ARHGAP6O43182 974 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 THAP12O43422 761 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 NCK2O43639 380 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 PPFIA4O75335 1185 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 SASH1O94885 1247 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 ANXA1P04083 346 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 SNRPA1P09661 255 aaKnown RBP5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 ATP5JP18859 108 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 GLDCP23378 1020 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 SARSP49591 514 aaKnown RBP5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 GZMKP49863 264 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 ADCY7P51828 1080 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 ARFIP2P53365 341 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 APBA1Q02410 837 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 GRM1Q13255 1194 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 NFYCQ13952 458 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 ARL13BQ3SXY8 428 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 CCDC93Q567U6 631 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 AFMIDQ63HM1 303 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 HIBCHQ6NVY1 386 aaPredicted RBP5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 TLDC1Q6P9B6 456 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 SEM1Q6ZVN7 128 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 SYDE1Q6ZW31 735 aaPredicted RBP5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 GPR155Q7Z3F1 870 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 FAM124AQ86V42 546 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 SESTD1Q86VW0 696 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 LIX1LQ8IVB5 337 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 ANKRD53Q8N9V6 530 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 ZNF527Q8NB42 609 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 ATP11CQ8NB49 1132 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 IL17RDQ8NFM7 739 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 RABGGTAQ92696 567 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 PWWP2AQ96N64 755 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 ISCA1Q9BUE6 129 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 DPH1Q9BZG8 443 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 ZNF518BQ9C0D4 1074 aa5.7□□□□□ -1.5
HMGB3P18-201ENST00000406327 BRD9Q9H8M2 597 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms