RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 DENND3A2RUS2 1198 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 H0YCG3 227 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 DDX39AO00148 427 aaKnown RBP4.12□□□□□ -1.75
RTN4-209ENST00000405240 C21orf2O43822 256 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 KIAA0754O94854 1291 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 CCND2P30279 289 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 NOMO3P69849 1222 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 C1QBPQ07021 282 aaKnown RBP4.12□□□□□ -1.75
RTN4-209ENST00000405240 CCDC15Q0P6D6 951 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 DMP1Q13316 513 aaPredicted RBP4.12□□□□□ -1.75
RTN4-209ENST00000405240 MAMLD1Q13495 774 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 TARBP2Q15633 366 aaKnown RBP4.12□□□□□ -1.75
RTN4-209ENST00000405240 KCTD19Q17RG1 926 aaPredicted RBP4.12□□□□□ -1.75
RTN4-209ENST00000405240 LRRC38Q5VT99 294 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 TDRD10Q5VZ19 366 aaKnown RBP4.12□□□□□ -1.75
RTN4-209ENST00000405240 PLA2G4FQ68DD2 849 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 MSL1Q68DK7 614 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 CGB2Q6NT52 195 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 MCPH1Q8NEM0 835 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 ATL2Q8NHH9 583 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 EXD1Q8NHP7 514 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 DENND1AQ8TEH3 1009 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 GRK7Q8WTQ7 553 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 CKAP2Q8WWK9 683 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 MAML1Q92585 1016 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 DHX33Q9H6R0 707 aaKnown RBP4.12□□□□□ -1.75
RTN4-209ENST00000405240 TMEM134Q9H6X4 195 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 APOBEC3GQ9HC16 384 aaKnown RBP4.12□□□□□ -1.75
RTN4-209ENST00000405240 RAVER2Q9HCJ3 691 aaKnown RBP4.12□□□□□ -1.75
RTN4-209ENST00000405240 TOPORSQ9NS56 1045 aaPredicted RBP4.12□□□□□ -1.75
RTN4-209ENST00000405240 CHST7Q9NS84 486 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 DRG1Q9Y295 367 aaKnown RBP4.12□□□□□ -1.75
RTN4-209ENST00000405240 GOLGA8IPA6NC78 632 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 C3orf70A6NLC5 250 aaPredicted RBP4.12□□□□□ -1.75
RTN4-209ENST00000405240 GOLGA8JA6NMD2 632 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 ABLIM1O14639 778 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 RASGRF2O14827 1237 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 CLDN3O15551 220 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 SNX3O60493 162 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 DKC1O60832 514 aaKnown RBP eCLIP4.12□□□□□ -1.75
RTN4-209ENST00000405240 CETPP11597 493 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 BPIFB4P59827 614 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 KRT17Q04695 432 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 PREPLQ4J6C6 727 aaPredicted RBP4.12□□□□□ -1.75
RTN4-209ENST00000405240 ASRGL1Q7L266 308 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 OTUD6AQ7L8S5 288 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 LRRC34Q8IZ02 419 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 ABRAQ8N0Z2 381 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 TTLL6Q8N841 843 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 SAAL1Q96ER3 474 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 TRAIPQ9BWF2 469 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 CCDC113Q9H0I3 377 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 MYOZ2Q9NPC6 264 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 KMT5AQ9NQR1 393 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 CYP26B1Q9NR63 512 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 FETUBQ9UGM5 382 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 ZNF214Q9UL59 606 aaPredicted RBP4.12□□□□□ -1.75
RTN4-209ENST00000405240 R3HDM2Q9Y2K5 976 aaKnown RBP4.12□□□□□ -1.75
RTN4-209ENST00000405240 TELO2Q9Y4R8 837 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 RIPK3Q9Y572 518 aa4.12□□□□□ -1.75
RTN4-209ENST00000405240 A0A0B4J269 797 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 RGS16O15492 202 aaPredicted RBP4.11□□□□□ -1.75
RTN4-209ENST00000405240 FAM155BO75949 473 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 FGFR4P22455 802 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 DSG3P32926 999 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 IFFO1Q0D2I5 559 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 ZNF252P-AS1Q0IIN9 211 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 MPP2Q14168 576 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 NBPF9Q3BBW0 867 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 XKR9Q5GH70 373 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 SPDYAQ5MJ70 313 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 FAM102BQ5T8I3 360 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 CCDC121Q6ZUS5 278 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 ADAT2Q7Z6V5 191 aaKnown RBP4.11□□□□□ -1.75
RTN4-209ENST00000405240 USP37Q86T82 979 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 PPM1KQ8N3J5 372 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 RIBC1Q8N443 379 aaPredicted RBP4.11□□□□□ -1.75
RTN4-209ENST00000405240 ZCCHC9Q8N567 271 aaKnown RBP4.11□□□□□ -1.75
RTN4-209ENST00000405240 ANKLE1Q8NAG6 615 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 CCDC197Q8NCU1 140 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 BBOF1Q8ND07 529 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 ZKSCAN4Q969J2 545 aaPredicted RBP4.11□□□□□ -1.75
RTN4-209ENST00000405240 SGSM3Q96HU1 749 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 WNK4Q96J92 1243 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 RMDN3Q96TC7 470 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 DHRS4Q9BTZ2 278 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 DDX23Q9BUQ8 820 aaKnown RBP4.11□□□□□ -1.75
RTN4-209ENST00000405240 TRIM31Q9BZY9 425 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 PORCNQ9H237 461 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 TAOK3Q9H2K8 898 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 NINJ2Q9NZG7 142 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 CHORDC1Q9UHD1 332 aaPredicted RBP4.11□□□□□ -1.75
RTN4-209ENST00000405240 ZMYND8Q9ULU4 1186 aaPredicted RBP4.11□□□□□ -1.75
RTN4-209ENST00000405240 BCS1LQ9Y276 419 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 PPME1Q9Y570 386 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 TMEM191CA6NGB0 347 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 O00370 1275 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 PRPF4O43172 522 aaKnown RBP eCLIP4.11□□□□□ -1.75
RTN4-209ENST00000405240 RAD17O75943 681 aa4.11□□□□□ -1.75
RTN4-209ENST00000405240 EDN1P05305 212 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms