RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 C16orf45Q96MC5 204 aaPredicted RBP22.64■■□□□ 1.22
TPM1-208ENST00000404484 UBE2TQ9NPD8 197 aaPredicted RBP22.64■■□□□ 1.22
TPM1-208ENST00000404484 C1orf112Q9NSG2 853 aa22.64■■□□□ 1.22
TPM1-208ENST00000404484 STAG3L1P0CL83 205 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 KIF11P52732 1056 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 MFAP3P55082 362 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 DUOXA2Q1HG44 320 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 SLC27A1Q6PCB7 646 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 CDR2LQ86X02 465 aaPredicted RBP22.63■■□□□ 1.21
TPM1-208ENST00000404484 SEMA4DQ92854 862 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 SCLYQ96I15 445 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 CELF4Q9BZC1 486 aaKnown RBP22.63■■□□□ 1.21
TPM1-208ENST00000404484 LUC7LQ9NQ29 371 aaKnown RBP22.63■■□□□ 1.21
TPM1-208ENST00000404484 TRPV2Q9Y5S1 764 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 PHACTR2O75167 634 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 HLA-DRAP01903 254 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 WNT7BP56706 349 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 TDRD10Q5VZ19 366 aaKnown RBP22.63■■□□□ 1.21
TPM1-208ENST00000404484 IRF2BP2Q7Z5L9 587 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 VPS36Q86VN1 386 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 ACRBPQ8NEB7 543 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 FAM212AQ96EL1 285 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 CCDC94Q9BW85 323 aaPredicted RBP22.63■■□□□ 1.21
TPM1-208ENST00000404484 IMPG2Q9BZV3 1241 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 CDHR5Q9HBB8 845 aa22.63■■□□□ 1.21
TPM1-208ENST00000404484 AJAP1Q9UKB5 411 aaPredicted RBP22.63■■□□□ 1.21
TPM1-208ENST00000404484 PITPNM1O00562 1244 aa22.62■■□□□ 1.21
TPM1-208ENST00000404484 OFD1O75665 1012 aa22.62■■□□□ 1.21
TPM1-208ENST00000404484 LCA5LO95447 670 aa22.62■■□□□ 1.21
TPM1-208ENST00000404484 TNNC2P02585 160 aa22.62■■□□□ 1.21
TPM1-208ENST00000404484 ACRP10323 421 aa22.62■■□□□ 1.21
TPM1-208ENST00000404484 GRM5P41594 1212 aa22.62■■□□□ 1.21
TPM1-208ENST00000404484 GCNT1Q02742 428 aa22.62■■□□□ 1.21
TPM1-208ENST00000404484 ARID5AQ03989 594 aa22.62■■□□□ 1.21
TPM1-208ENST00000404484 PPIGQ13427 754 aaKnown RBP eCLIP22.62■■□□□ 1.212e-10■■□□□ 11.9
TPM1-208ENST00000404484 BFSP2Q13515 415 aa22.62■■□□□ 1.21
TPM1-208ENST00000404484 LMBRD2Q68DH5 695 aaPredicted RBP22.62■■□□□ 1.21
TPM1-208ENST00000404484 ARHGEF19Q8IW93 802 aa22.62■■□□□ 1.21
TPM1-208ENST00000404484 PPM1KQ8N3J5 372 aa22.62■■□□□ 1.21
TPM1-208ENST00000404484 WNT8BQ93098 351 aa22.62■■□□□ 1.21
TPM1-208ENST00000404484 VWCEQ96DN2 955 aa22.62■■□□□ 1.21
TPM1-208ENST00000404484 ANKRD36BP1Q96IX9 119 aa22.62■■□□□ 1.21
TPM1-208ENST00000404484 ACAP3Q96P50 834 aa22.62■■□□□ 1.21
TPM1-208ENST00000404484 ASB7Q9H672 318 aa22.62■■□□□ 1.21
TPM1-208ENST00000404484 PTPRJQ12913 1337 aa22.61■■□□□ 1.21
TPM1-208ENST00000404484 GFPT2O94808 682 aa22.61■■□□□ 1.21
TPM1-208ENST00000404484 PLEKP08567 350 aaPredicted RBP22.61■■□□□ 1.21
TPM1-208ENST00000404484 TMEM191BP0C7N4 346 aa22.61■■□□□ 1.21
TPM1-208ENST00000404484 TNNT1P13805 278 aa22.61■■□□□ 1.21
TPM1-208ENST00000404484 FGFR4P22455 802 aa22.61■■□□□ 1.21
TPM1-208ENST00000404484 OSTNP61366 133 aa22.61■■□□□ 1.21
TPM1-208ENST00000404484 PTK7Q13308 1070 aa22.61■■□□□ 1.21
TPM1-208ENST00000404484 ARHGAP44Q17R89 818 aa22.61■■□□□ 1.21
TPM1-208ENST00000404484 ARHGAP29Q52LW3 1261 aa22.61■■□□□ 1.21
TPM1-208ENST00000404484 KIAA1328Q86T90 577 aa22.61■■□□□ 1.21
TPM1-208ENST00000404484 CD302Q8IX05 232 aa22.61■■□□□ 1.21
TPM1-208ENST00000404484 CEP120Q8N960 986 aa22.61■■□□□ 1.21
TPM1-208ENST00000404484 CXCL8P10145 99 aa22.6■■□□□ 1.21
TPM1-208ENST00000404484 HOXA11P31270 313 aaPredicted RBP22.6■■□□□ 1.21
TPM1-208ENST00000404484 ASTE1Q2TB18 679 aaPredicted RBP22.6■■□□□ 1.21
TPM1-208ENST00000404484 SMYD5Q6GMV2 418 aa22.6■■□□□ 1.21
TPM1-208ENST00000404484 ZNF662Q6ZS27 426 aa22.6■■□□□ 1.21
TPM1-208ENST00000404484 NT5DC4Q86YG4 428 aa22.6■■□□□ 1.21
TPM1-208ENST00000404484 OR5B17Q8NGF7 314 aa22.6■■□□□ 1.21
TPM1-208ENST00000404484 CAGE1Q8TC20 777 aa22.6■■□□□ 1.21
TPM1-208ENST00000404484 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.6■■□□□ 1.211e-6■□□□□ 10.6
TPM1-208ENST00000404484 HAUS4Q9H6D7 363 aa22.6■■□□□ 1.21
TPM1-208ENST00000404484 IL23AQ9NPF7 189 aa22.6■■□□□ 1.21
TPM1-208ENST00000404484 RBAK-RBAKDNI3L0D1 243 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 SOX1O00570 391 aaPredicted RBP22.59■■□□□ 1.21
TPM1-208ENST00000404484 NPTXRO95502 500 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 TFAMQ00059 246 aaKnown RBP22.59■■□□□ 1.21
TPM1-208ENST00000404484 NCOA4Q13772 614 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 TRIM71Q2Q1W2 868 aaKnown RBP22.59■■□□□ 1.21
TPM1-208ENST00000404484 LRIT3Q3SXY7 679 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 TMEM240Q5SV17 173 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 HELQQ8TDG4 1101 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 JAKMIP2Q96AA8 810 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 TRIM6Q9C030 488 aaPredicted RBP22.59■■□□□ 1.21
TPM1-208ENST00000404484 GPR88Q9GZN0 384 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 PLEKHA5Q9HAU0 1116 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 PIN4Q9Y237 131 aaKnown RBP22.59■■□□□ 1.21
TPM1-208ENST00000404484 CDY2AQ9Y6F7 541 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 CKBP12277 381 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 SLC18A3Q16572 532 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 ZNF365Q70YC5 407 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 TRAPPC11Q7Z392 1133 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 TMEM40Q8WWA1 233 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 TSGA10Q9BZW7 698 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 MTMR12Q9C0I1 747 aa22.59■■□□□ 1.21
TPM1-208ENST00000404484 REXO2Q9Y3B8 237 aaKnown RBP22.59■■□□□ 1.21
TPM1-208ENST00000404484 CAND2O75155 1236 aa22.58■■□□□ 1.2
TPM1-208ENST00000404484 VNN1O95497 513 aa22.58■■□□□ 1.2
TPM1-208ENST00000404484 TBXAS1P24557 533 aaPredicted RBP22.58■■□□□ 1.2
TPM1-208ENST00000404484 VAV2P52735 878 aa22.58■■□□□ 1.2
TPM1-208ENST00000404484 TRPC3Q13507 836 aa22.58■■□□□ 1.2
TPM1-208ENST00000404484 C10orf76Q5T2E6 689 aa22.58■■□□□ 1.2
TPM1-208ENST00000404484 SHC3Q92529 594 aa22.58■■□□□ 1.2
TPM1-208ENST00000404484 IFIH1Q9BYX4 1025 aaKnown RBP22.58■■□□□ 1.2
TPM1-208ENST00000404484 C2CD2Q9Y426 696 aa22.58■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms