RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CPLX3Q8WVH0 158 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 BADQ92934 168 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 PDLIM2Q96JY6 352 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 PPP1R9BQ96SB3 815 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 TMX1Q9H3N1 280 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 SLC38A7Q9NVC3 462 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 ZNHIT6Q9NWK9 470 aaKnown RBP15.33■□□□□ 0.04
SKA1-202ENST00000398452 RAB20Q9NX57 234 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 UBQLN1Q9UMX0 589 aaKnown RBP15.33■□□□□ 0.04
SKA1-202ENST00000398452 LUC7L2Q9Y383 392 aaKnown RBP15.33■□□□□ 0.04
SKA1-202ENST00000398452 PCDHB7Q9Y5E2 793 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 UMODL1Q5DID0 1318 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 DNAH12Q6ZR08 3092 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 AKR1B15C9JRZ8 316 aaPredicted RBP15.32■□□□□ 0.04
SKA1-202ENST00000398452 HOXA2O43364 376 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 ZC3H11AO75152 810 aaKnown RBP eCLIP15.32■□□□□ 0.04
SKA1-202ENST00000398452 ACTN1P12814 892 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 RFX1P22670 979 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 PTPN21Q16825 1174 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 ZACNQ401N2 412 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 CNKSR3Q6P9H4 555 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 TRAPPC11Q7Z392 1133 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 ECHDC2Q86YB7 292 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 URGCPQ8TCY9 931 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 NT5C1BQ96P26 610 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 SPAG5Q96R06 1193 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 EDEM3Q9BZQ6 932 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 MTMR12Q9C0I1 747 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 INTS2Q9H0H0 1204 aaKnown RBP15.32■□□□□ 0.04
SKA1-202ENST00000398452 NUCKS1Q9H1E3 243 aaKnown RBP15.32■□□□□ 0.04
SKA1-202ENST00000398452 WNT8AQ9H1J5 351 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 RSAD1Q9HA92 442 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 PLCB1Q9NQ66 1216 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 KLK14Q9P0G3 267 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 CNTN3Q9P232 1028 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 LAMA3Q16787 3333 aa15.32■□□□□ 0.04
SKA1-202ENST00000398452 EFCAB14O75071 495 aa15.31■□□□□ 0.04
SKA1-202ENST00000398452 HLA-DRAP01903 254 aa15.31■□□□□ 0.04
SKA1-202ENST00000398452 CXCL10P02778 98 aa15.31■□□□□ 0.04
SKA1-202ENST00000398452 C4BPAP04003 597 aaKnown RBP15.31■□□□□ 0.04
SKA1-202ENST00000398452 ATF7P17544 494 aaPredicted RBP15.31■□□□□ 0.04
SKA1-202ENST00000398452 SLC9A1P19634 815 aa15.31■□□□□ 0.04
SKA1-202ENST00000398452 PON1P27169 355 aa15.31■□□□□ 0.04
SKA1-202ENST00000398452 PBX1P40424 430 aa15.31■□□□□ 0.04
SKA1-202ENST00000398452 MCCD1P59942 119 aaPredicted RBP15.31■□□□□ 0.04
SKA1-202ENST00000398452 NCOA4Q13772 614 aa15.31■□□□□ 0.04
SKA1-202ENST00000398452 LRIT3Q3SXY7 679 aa15.31■□□□□ 0.04
SKA1-202ENST00000398452 FIGNQ5HY92 759 aa15.31■□□□□ 0.04
SKA1-202ENST00000398452 MFSD5Q6N075 450 aa15.31■□□□□ 0.04
SKA1-202ENST00000398452 GLB1LQ6UWU2 654 aa15.31■□□□□ 0.04
SKA1-202ENST00000398452 MRPL10Q7Z7H8 261 aaKnown RBP15.31■□□□□ 0.04
SKA1-202ENST00000398452 RNF25Q96BH1 459 aaPredicted RBP15.31■□□□□ 0.04
SKA1-202ENST00000398452 FAM161BQ96MY7 647 aa15.31■□□□□ 0.04
SKA1-202ENST00000398452 DPP3Q9NY33 737 aa15.31■□□□□ 0.04
SKA1-202ENST00000398452 CEP72Q9P209 647 aa15.31■□□□□ 0.04
SKA1-202ENST00000398452 ITGA11Q9UKX5 1188 aa15.31■□□□□ 0.04
SKA1-202ENST00000398452 SIK3Q9Y2K2 1263 aa15.31■□□□□ 0.04
SKA1-202ENST00000398452 A0A1W2PQJ5 194 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 TRIM43BA6NCK2 446 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 MGEA5O60502 916 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 THP07101 528 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 NFICP08651 508 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 P4HA1P13674 534 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 CASP14P31944 242 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 MFAP3P55082 362 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 POLR2FP61218 127 aaKnown RBP15.3■□□□□ 0.04
SKA1-202ENST00000398452 RBP5P82980 135 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 KCNMA1Q12791 1236 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 LRMPQ12912 555 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 MYO1EQ12965 1108 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 PPIGQ13427 754 aaKnown RBP eCLIP15.3■□□□□ 0.04
SKA1-202ENST00000398452 SGSM1Q2NKQ1 1148 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 EPC2Q52LR7 807 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 GLRA4Q5JXX5 417 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 C1orf220Q5T0J3 134 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 TDRD10Q5VZ19 366 aaKnown RBP15.3■□□□□ 0.04
SKA1-202ENST00000398452 TRIM65Q6PJ69 517 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 CCDC186Q7Z3E2 898 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 EFCAB13Q8IY85 973 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 OR5B17Q8NGF7 314 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 TAS1R2Q8TE23 839 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 ZNF516Q92618 1163 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 TAF4BQ92750 862 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 TRIM43Q96BQ3 446 aaPredicted RBP15.3■□□□□ 0.04
SKA1-202ENST00000398452 OSBPL7Q9BZF2 842 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 ELAC1Q9H777 363 aaKnown RBP15.3■□□□□ 0.04
SKA1-202ENST00000398452 TMEM161AQ9NX61 479 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 APEX2Q9UBZ4 518 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 COQ4Q9Y3A0 265 aa15.3■□□□□ 0.04
SKA1-202ENST00000398452 SMIM28A0A1B0GU29 152 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 C9IYK1 514 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 ENPP3O14638 875 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 ITGB3P05106 788 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 CCDC172P0C7W6 258 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 KCNE1P15382 129 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 CYP3A5P20815 502 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 ATICP31939 592 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 KRT9P35527 623 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 MLH1P40692 756 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 KLK7P49862 253 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms