RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 CITO14578 2027 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 A0A1W2PQJ5 194 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 LRRN2O75325 713 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 IPO7O95373 1038 aaKnown RBP13.38□□□□□ -0.27
CIITA-202ENST00000381835 SYF2O95926 243 aaKnown RBP13.38□□□□□ -0.27
CIITA-202ENST00000381835 CYLC1P35663 651 aaPredicted RBP13.38□□□□□ -0.27
CIITA-202ENST00000381835 AARSP49588 968 aaKnown RBP eCLIP13.38□□□□□ -0.27
CIITA-202ENST00000381835 LBX1P52954 281 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 KRT39Q6A163 491 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 RRAGAQ7L523 313 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 CTU1Q7Z7A3 348 aaKnown RBP13.38□□□□□ -0.27
CIITA-202ENST00000381835 GPIHBP1Q8IV16 184 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 BRSK2Q8IWQ3 736 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 CAGE1Q8TC20 777 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 IQCDQ96DY2 449 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 TMEM8AQ9HCN3 771 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.38□□□□□ -0.27
CIITA-202ENST00000381835 CPSF3Q9UKF6 684 aaKnown RBP13.38□□□□□ -0.27
CIITA-202ENST00000381835 TRPV2Q9Y5S1 764 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 ANK1P16157 1881 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 TRIP11Q15643 1979 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 TARSL2A2RTX5 802 aaKnown RBP13.38□□□□□ -0.27
CIITA-202ENST00000381835 MCF2P10911 925 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 KLHDC7AQ5VTJ3 777 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 LRRC31Q6UY01 552 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 SV2AQ7L0J3 742 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 ZNF516Q92618 1163 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 INTS2Q9H0H0 1204 aaKnown RBP13.38□□□□□ -0.27
CIITA-202ENST00000381835 GANQ9H2C0 597 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 PLCB1Q9NQ66 1216 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 CEP72Q9P209 647 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 RSPH14Q9UHP6 348 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 HPCAL4Q9UM19 191 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 PHF24Q9UPV7 400 aa13.38□□□□□ -0.27
CIITA-202ENST00000381835 PIN4Q9Y237 131 aaKnown RBP13.38□□□□□ -0.27
CIITA-202ENST00000381835 PTPRJQ12913 1337 aa13.37□□□□□ -0.27
CIITA-202ENST00000381835 DNM1LO00429 736 aa13.37□□□□□ -0.27
CIITA-202ENST00000381835 NPTXRO95502 500 aa13.37□□□□□ -0.27
CIITA-202ENST00000381835 CHRNA1P02708 482 aa13.37□□□□□ -0.27
CIITA-202ENST00000381835 STAG3L1P0CL83 205 aa13.37□□□□□ -0.27
CIITA-202ENST00000381835 CXCL8P10145 99 aa13.37□□□□□ -0.27
CIITA-202ENST00000381835 UCHL3P15374 230 aa13.37□□□□□ -0.27
CIITA-202ENST00000381835 MCCD1P59942 119 aaPredicted RBP13.37□□□□□ -0.27
CIITA-202ENST00000381835 PTPN11Q06124 597 aaPredicted RBP13.37□□□□□ -0.27
CIITA-202ENST00000381835 PCBP1Q15365 356 aaKnown RBP eCLIP13.37□□□□□ -0.27
CIITA-202ENST00000381835 ENOX2Q16206 610 aaKnown RBP13.37□□□□□ -0.27
CIITA-202ENST00000381835 DPY19L2P1Q6NXN4 242 aa13.37□□□□□ -0.27
CIITA-202ENST00000381835 NOTUMQ6P988 496 aa13.37□□□□□ -0.27
CIITA-202ENST00000381835 GJB7Q6PEY0 223 aa13.37□□□□□ -0.27
CIITA-202ENST00000381835 ZNF662Q6ZS27 426 aa13.37□□□□□ -0.27
CIITA-202ENST00000381835 TRPV6Q9H1D0 765 aa13.37□□□□□ -0.27
CIITA-202ENST00000381835 RPF1Q9H9Y2 349 aaKnown RBP13.37□□□□□ -0.27
CIITA-202ENST00000381835 SIX2Q9NPC8 291 aa13.37□□□□□ -0.27
CIITA-202ENST00000381835 NOC2LQ9Y3T9 749 aaKnown RBP13.37□□□□□ -0.27
CIITA-202ENST00000381835 KIAA0100Q14667 2235 aaKnown RBP13.37□□□□□ -0.27
CIITA-202ENST00000381835 LRRC53A6NM62 1247 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 P4HA2O15460 535 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 B4GALT4O60513 344 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 GTF2H1P32780 548 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 PTK7Q13308 1070 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 BIRC3Q13489 604 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 MEA1Q16626 185 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 EPC2Q52LR7 807 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 TAS1R2Q8TE23 839 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 COG1Q8WTW3 980 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 BAP1Q92560 729 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 GDAP1L1Q96MZ0 367 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 CGRRF1Q99675 332 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 EIF2AQ9BY44 585 aaKnown RBP13.36□□□□□ -0.27
CIITA-202ENST00000381835 NHEJ1Q9H9Q4 299 aaPredicted RBP13.36□□□□□ -0.27
CIITA-202ENST00000381835 ZMYND10O75800 440 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 RPLP2P05387 115 aaKnown RBP13.36□□□□□ -0.27
CIITA-202ENST00000381835 CLDN10P78369 228 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 ENPEPQ07075 957 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 NFX1Q12986 1120 aaKnown RBP13.36□□□□□ -0.27
CIITA-202ENST00000381835 RAPGEF1Q13905 1077 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 SLC27A1Q6PCB7 646 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 RPAINQ86UA6 219 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 FAM228AQ86W67 206 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 FBXL13Q8NEE6 735 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 LMO3Q8TAP4 145 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 DHX38Q92620 1227 aaKnown RBP13.36□□□□□ -0.27
CIITA-202ENST00000381835 SEMA4DQ92854 862 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 TRIM6Q9C030 488 aaPredicted RBP13.36□□□□□ -0.27
CIITA-202ENST00000381835 SENP6Q9GZR1 1112 aaPredicted RBP13.36□□□□□ -0.27
CIITA-202ENST00000381835 OGDHLQ9ULD0 1010 aa13.36□□□□□ -0.27
CIITA-202ENST00000381835 MKI67P46013 3256 aaKnown RBP13.35□□□□□ -0.27
CIITA-202ENST00000381835 EIF3CLB5ME19 914 aaKnown RBP13.35□□□□□ -0.27
CIITA-202ENST00000381835 ARVCFO00192 962 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 CLTAP09496 248 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 FBXO46Q6PJ61 603 aaPredicted RBP13.35□□□□□ -0.27
CIITA-202ENST00000381835 CCDC170Q8IYT3 715 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 OR5B17Q8NGF7 314 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 ELMO3Q96BJ8 720 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 SPAG5Q96R06 1193 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 EIF3CQ99613 913 aaKnown RBP13.35□□□□□ -0.27
CIITA-202ENST00000381835 EDEM3Q9BZQ6 932 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 LACRTQ9GZZ8 138 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 AJAP1Q9UKB5 411 aaPredicted RBP13.35□□□□□ -0.27
CIITA-202ENST00000381835 HES2Q9Y543 173 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms