RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 MINDY4Q4G0A6 757 aa4.87□□□□□ -1.63
SCN1A-202ENST00000375405 ATPAF1Q5TC12 328 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-202ENST00000375405 SFMBT2Q5VUG0 894 aa4.87□□□□□ -1.63
SCN1A-202ENST00000375405 OR6B2Q6IFH4 312 aa4.87□□□□□ -1.63
SCN1A-202ENST00000375405 IZUMO2Q6UXV1 221 aa4.87□□□□□ -1.63
SCN1A-202ENST00000375405 ACAD11Q709F0 780 aa4.87□□□□□ -1.63
SCN1A-202ENST00000375405 DHX32Q7L7V1 743 aaKnown RBP4.87□□□□□ -1.63
SCN1A-202ENST00000375405 VASH1Q7L8A9 365 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-202ENST00000375405 BRSK2Q8IWQ3 736 aa4.87□□□□□ -1.63
SCN1A-202ENST00000375405 CHPFQ8IZ52 775 aa4.87□□□□□ -1.63
SCN1A-202ENST00000375405 USP20Q9Y2K6 914 aa4.87□□□□□ -1.63
SCN1A-202ENST00000375405 GDAQ9Y2T3 454 aa4.87□□□□□ -1.63
SCN1A-202ENST00000375405 PCDHA1Q9Y5I3 950 aa4.87□□□□□ -1.63
SCN1A-202ENST00000375405 FAM25AB3EWG3 89 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 FAM25CB3EWG5 89 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 FAM25GB3EWG6 89 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 PCDH8O95206 1070 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 RASGRP1O95267 797 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 TCEA1P23193 301 aaKnown RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 AKT2P31751 481 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 STAT1P42224 750 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 MARSP56192 900 aaKnown RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 MYL7Q01449 175 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 PKN1Q16512 942 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 SUGP1Q8IWZ8 645 aaKnown RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 DAW1Q8N136 415 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 MIER2Q8N344 545 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 C19orf18Q8NEA5 215 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 AGPAT1Q99943 283 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 C17orf80Q9BSJ5 609 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 CYP39A1Q9NYL5 469 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 ARHGAP28Q9P2N2 729 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 KIF21BO75037 1637 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 FRMPD2Q68DX3 1309 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 CLTBP09497 229 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 HNF1BP35680 557 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 CPA2P48052 419 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 KCNJ5P48544 419 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 CDH11P55287 796 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 MTMR3Q13615 1198 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 SEPT2Q15019 361 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 DGKKQ5KSL6 1271 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 USP51Q70EK9 711 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 FAM133AQ8N9E0 248 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 ZBTB8BQ8NAP8 495 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 CALML6Q8TD86 181 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 CYGBQ8WWM9 190 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 STAMQ92783 540 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 JSRP1Q96MG2 331 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 PCDH18Q9HCL0 1135 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 CUEDC1Q9NWM3 386 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 IMPAD1Q9NX62 359 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 SMARCAL1Q9NZC9 954 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 TNNQ9UQP3 1299 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 V9GYQ6 96 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 ICE1Q9Y2F5 2266 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 A0A1B0GVL5 298 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 SAC3D1A6NKF1 404 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 ATG7O95352 703 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 GNB3P16520 340 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 VCLP18206 1134 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 MPP3Q13368 585 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF235Q14590 738 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 ALG11Q2TAA5 492 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 WASHC2DQ5SRD0 308 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 GARNL3Q5VVW2 1013 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 KLHL17Q6TDP4 642 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 EPHX4Q8IUS5 362 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 KCNH5Q8NCM2 988 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 EFHD2Q96C19 240 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 ITCHQ96J02 903 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 FAR2Q96K12 515 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 CNBD2Q96M20 576 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 ZWILCHQ9H900 591 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 CNOT8Q9UFF9 292 aaKnown RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 SRP68Q9UHB9 627 aaKnown RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 RNF123Q5XPI4 1314 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 DDX3XO00571 662 aaKnown RBP eCLIP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 HNRNPDLO14979 420 aaKnown RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 ATP9BO43861 1147 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 TADA2AO75478 443 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 GDI2P50395 445 aaKnown RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 PPP2CAP67775 309 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 POU5F1Q01860 360 aaKnown RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 EDRF1Q3B7T1 1238 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 ATP13A4Q4VNC1 1196 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 SNAP47Q5SQN1 464 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 IRGCQ6NXR0 463 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 CACUL1Q86Y37 369 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 MICU2Q8IYU8 434 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 SYTL5Q8TDW5 730 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 KLHL32Q96NJ5 620 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 RAD21L1Q9H4I0 556 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 NMRK2Q9NPI5 230 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 WHRNQ9P202 907 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 PADI4Q9UM07 663 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 NCKAP1Q9Y2A7 1128 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 SNX8Q9Y5X2 465 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 FAM92AA1XBS5 289 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 KPNA5O15131 536 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms