RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 LRRC37BQ96QE4 947 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 KCNQ5Q9NR82 932 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 CYP39A1Q9NYL5 469 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 ATRNL1Q5VV63 1379 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 CALRP27797 417 aaKnown RBP22.48■■□□□ 1.19
UPF3A-202ENST00000375299 LMNB2Q03252 620 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 DNAJC3Q13217 504 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 CLEC16AQ2KHT3 1053 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 ZNF365Q70YC5 407 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 PRUNE1Q86TP1 453 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 CCDC89Q8N998 374 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 HELQQ8TDG4 1101 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 HAO1Q9UJM8 370 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 LRRC42Q9Y546 428 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 NRXN2Q9P2S2 1712 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 GSTTP1A0A1W2PQM5 241 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 GRIN3BO60391 1043 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 NR1H3Q13133 447 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 SH3BP5LQ7L8J4 393 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 TRABD2AQ86V40 505 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 DDX27Q96GQ7 796 aaKnown RBP22.47■■□□□ 1.19
UPF3A-202ENST00000375299 OSBPL1AQ9BXW6 950 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 UBN1Q9NPG3 1134 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 ZFATQ9P243 1243 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 SBDSQ9Y3A5 250 aaKnown RBP eCLIP22.47■■□□□ 1.19
UPF3A-202ENST00000375299 SPAG7O75391 227 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 DCTN3O75935 186 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 POLR2MP0CAP2 368 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 SLC1A1P43005 524 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 RGS9BPQ6ZS82 235 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 FAM13CQ8NE31 585 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 ZNF483Q8TF39 744 aaPredicted RBP22.47■■□□□ 1.19
UPF3A-202ENST00000375299 STK32AQ8WU08 396 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 MROH7Q68CQ1 1323 aa22.47■■□□□ 1.19
UPF3A-202ENST00000375299 GOLGA8IPA6NC78 632 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 GOLGA8JA6NMD2 632 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 MAGEA4P43358 317 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 KLF1Q13351 362 aaPredicted RBP22.46■■□□□ 1.19
UPF3A-202ENST00000375299 SPARCL1Q14515 664 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 GRIPAP1Q4V328 841 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 MEX3CQ5U5Q3 659 aaKnown RBP22.46■■□□□ 1.19
UPF3A-202ENST00000375299 SLC17A8Q8NDX2 589 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 DENND1AQ8TEH3 1009 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 KIF9Q9HAQ2 790 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 FAM198AQ9UFP1 575 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 PRPF4O43172 522 aaKnown RBP eCLIP22.46■■□□□ 1.193e-7■■■□□ 17.1
UPF3A-202ENST00000375299 TPBGLP0DKB5 382 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 PLS3P13797 630 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 PEX19P40855 299 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 CCNG2Q16589 344 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 KRT39Q6A163 491 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 CEP128Q6ZU80 1094 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.46■■□□□ 1.19
UPF3A-202ENST00000375299 SPOCK2Q92563 424 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 NT5C1BQ96P26 610 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 KIAA1683Q9H0B3 1180 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 EHMT1Q9H9B1 1298 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 DBNDD1Q9H9R9 158 aa22.46■■□□□ 1.19
UPF3A-202ENST00000375299 AVENQ9NQS1 362 aaPredicted RBP22.46■■□□□ 1.19
UPF3A-202ENST00000375299 EXOC1LA0A1B0GW35 172 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 LINGO3P0C6S8 592 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 RALAP11233 206 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 RAD23BP54727 409 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 TRAF1Q13077 416 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 RBM26Q5T8P6 1007 aaKnown RBP22.45■■□□□ 1.18
UPF3A-202ENST00000375299 CYP4F22Q6NT55 531 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 CFAP57Q96MR6 1250 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 RBM15Q96T37 977 aaKnown RBP eCLIP22.45■■□□□ 1.18
UPF3A-202ENST00000375299 HEMGNQ9BXL5 484 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 FOXP3Q9BZS1 431 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 GCAP28676 217 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 ALDH1B1P30837 517 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 ALDH3A1P30838 453 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 GPC3P51654 580 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 SNRPFP62306 86 aaKnown RBP22.45■■□□□ 1.18
UPF3A-202ENST00000375299 GTF2BQ00403 316 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 CMPK2Q5EBM0 449 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 ZCCHC9Q8N567 271 aaKnown RBP22.45■■□□□ 1.18
UPF3A-202ENST00000375299 ENDOVQ8N8Q3 282 aaKnown RBP22.45■■□□□ 1.18
UPF3A-202ENST00000375299 DHX38Q92620 1227 aaKnown RBP22.45■■□□□ 1.18
UPF3A-202ENST00000375299 SLC7A6OSQ96CW6 309 aaPredicted RBP22.45■■□□□ 1.18
UPF3A-202ENST00000375299 FAM81BQ96LP2 452 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 SLCO1B3Q9NPD5 702 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 ZMYND8Q9ULU4 1186 aaPredicted RBP22.45■■□□□ 1.18
UPF3A-202ENST00000375299 COQ4Q9Y3A0 265 aa22.45■■□□□ 1.18
UPF3A-202ENST00000375299 ZNF536O15090 1300 aa22.44■■□□□ 1.18
UPF3A-202ENST00000375299 EDF1O60869 148 aaKnown RBP22.44■■□□□ 1.18
UPF3A-202ENST00000375299 VIL1P09327 827 aaKnown RBP22.44■■□□□ 1.18
UPF3A-202ENST00000375299 SLC18A1P54219 525 aa22.44■■□□□ 1.18
UPF3A-202ENST00000375299 MCCD1P59942 119 aaPredicted RBP22.44■■□□□ 1.18
UPF3A-202ENST00000375299 PTP4A2Q12974 167 aa22.44■■□□□ 1.18
UPF3A-202ENST00000375299 PDK4Q16654 411 aa22.44■■□□□ 1.18
UPF3A-202ENST00000375299 TRIM68Q6AZZ1 485 aa22.44■■□□□ 1.18
UPF3A-202ENST00000375299 HAUS6Q7Z4H7 955 aa22.44■■□□□ 1.18
UPF3A-202ENST00000375299 LONP2Q86WA8 852 aa22.44■■□□□ 1.18
UPF3A-202ENST00000375299 CBWD2Q8IUF1 395 aa22.44■■□□□ 1.18
UPF3A-202ENST00000375299 MCOLN2Q8IZK6 566 aa22.44■■□□□ 1.18
UPF3A-202ENST00000375299 TBC1D10AQ9BXI6 508 aa22.44■■□□□ 1.18
UPF3A-202ENST00000375299 IDI2Q9BXS1 227 aa22.44■■□□□ 1.18
UPF3A-202ENST00000375299 SPATS2LQ9NUQ6 558 aaKnown RBP22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms