RNA–Protein interactions for RNA: ENST00000371937.8

ATPAF1-202, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATPAF1, Length 1,827 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-202ENST00000371937 SYT11Q9BT88 431 aa28.27■■■□□ 2.12
ATPAF1-202ENST00000371937 EIF2AQ9BY44 585 aaKnown RBP28.27■■■□□ 2.12
ATPAF1-202ENST00000371937 IRX2Q9BZI1 471 aaPredicted RBP28.27■■■□□ 2.12
ATPAF1-202ENST00000371937 SENP6Q9GZR1 1112 aaPredicted RBP28.27■■■□□ 2.12
ATPAF1-202ENST00000371937 NAGPAQ9UK23 515 aa28.27■■■□□ 2.12
ATPAF1-202ENST00000371937 R3HCC1Q9Y3T6 440 aaKnown RBP28.27■■■□□ 2.12
ATPAF1-202ENST00000371937 MEFVO15553 781 aaPredicted RBP28.27■■■□□ 2.12
ATPAF1-202ENST00000371937 TMEM132DQ14C87 1099 aa28.27■■■□□ 2.12
ATPAF1-202ENST00000371937 SPOPLQ6IQ16 392 aa28.27■■■□□ 2.12
ATPAF1-202ENST00000371937 ALKBH5Q6P6C2 394 aaKnown RBP28.27■■■□□ 2.12
ATPAF1-202ENST00000371937 TAF4BQ92750 862 aa28.27■■■□□ 2.12
ATPAF1-202ENST00000371937 WNT8BQ93098 351 aa28.27■■■□□ 2.12
ATPAF1-202ENST00000371937 XRN2Q9H0D6 950 aaKnown RBP eCLIP28.27■■■□□ 2.12
ATPAF1-202ENST00000371937 APOBEC3GQ9HC16 384 aaKnown RBP28.27■■■□□ 2.12
ATPAF1-202ENST00000371937 NOC2LQ9Y3T9 749 aaKnown RBP28.27■■■□□ 2.12
ATPAF1-202ENST00000371937 TNFAIP3P21580 790 aa28.26■■■□□ 2.11
ATPAF1-202ENST00000371937 MYL6P60660 151 aa28.26■■■□□ 2.11
ATPAF1-202ENST00000371937 ZNF569Q5MCW4 686 aa28.26■■■□□ 2.11
ATPAF1-202ENST00000371937 FAM228AQ86W67 206 aa28.26■■■□□ 2.11
ATPAF1-202ENST00000371937 ELMO3Q96BJ8 720 aa28.26■■■□□ 2.11
ATPAF1-202ENST00000371937 AGPAT1Q99943 283 aa28.26■■■□□ 2.11
ATPAF1-202ENST00000371937 TRIM10Q9UDY6 481 aa28.26■■■□□ 2.11
ATPAF1-202ENST00000371937 TFR2Q9UP52 801 aa28.26■■■□□ 2.11
ATPAF1-202ENST00000371937 PTPN22Q9Y2R2 807 aa28.26■■■□□ 2.11
ATPAF1-202ENST00000371937 NUB1Q9Y5A7 615 aa28.26■■■□□ 2.11
ATPAF1-202ENST00000371937 DDX3XO00571 662 aaKnown RBP eCLIP28.25■■■□□ 2.115e-8■■■■■ 28.2
ATPAF1-202ENST00000371937 CYP26A1O43174 497 aa28.25■■■□□ 2.11
ATPAF1-202ENST00000371937 RPS6KA5O75582 802 aa28.25■■■□□ 2.11
ATPAF1-202ENST00000371937 CHRNA1P02708 482 aa28.25■■■□□ 2.11
ATPAF1-202ENST00000371937 CASQ1P31415 396 aa28.25■■■□□ 2.11
ATPAF1-202ENST00000371937 THPOP40225 353 aa28.25■■■□□ 2.11
ATPAF1-202ENST00000371937 SMYD5Q6GMV2 418 aa28.25■■■□□ 2.11
ATPAF1-202ENST00000371937 SLC30A5Q8TAD4 765 aa28.25■■■□□ 2.11
ATPAF1-202ENST00000371937 SH3TC2Q8TF17 1288 aa28.25■■■□□ 2.11
ATPAF1-202ENST00000371937 WDR24Q96S15 920 aa28.25■■■□□ 2.11
ATPAF1-202ENST00000371937 SNTG2Q9NY99 539 aa28.25■■■□□ 2.11
ATPAF1-202ENST00000371937 DERAQ9Y315 318 aa28.25■■■□□ 2.11
ATPAF1-202ENST00000371937 CTSHP09668 335 aa28.25■■■□□ 2.11
ATPAF1-202ENST00000371937 KRT5P13647 590 aa28.25■■■□□ 2.11
ATPAF1-202ENST00000371937 MGAT3Q09327 533 aa28.25■■■□□ 2.11
ATPAF1-202ENST00000371937 GLYCTKQ8IVS8 523 aa28.25■■■□□ 2.11
ATPAF1-202ENST00000371937 ATP8B3O60423 1300 aa28.24■■■□□ 2.11
ATPAF1-202ENST00000371937 HSPA6P17066 643 aa28.24■■■□□ 2.11
ATPAF1-202ENST00000371937 BPIFB4P59827 614 aa28.24■■■□□ 2.11
ATPAF1-202ENST00000371937 ZNF699Q32M78 642 aa28.24■■■□□ 2.11
ATPAF1-202ENST00000371937 C1orf127Q8N9H9 656 aa28.24■■■□□ 2.11
ATPAF1-202ENST00000371937 EPS8L1Q8TE68 723 aa28.24■■■□□ 2.11
ATPAF1-202ENST00000371937 DHX38Q92620 1227 aaKnown RBP28.24■■■□□ 2.11
ATPAF1-202ENST00000371937 ARID3AQ99856 593 aa28.24■■■□□ 2.11
ATPAF1-202ENST00000371937 NENFQ9UMX5 172 aa28.24■■■□□ 2.11
ATPAF1-202ENST00000371937 A0A1W2PQ45 241 aaPredicted RBP28.23■■■□□ 2.11
ATPAF1-202ENST00000371937 A0A1W2PQY0 241 aa28.23■■■□□ 2.11
ATPAF1-202ENST00000371937 KBTBD13C9JR72 458 aa28.23■■■□□ 2.11
ATPAF1-202ENST00000371937 SGPL1O95470 568 aa28.23■■■□□ 2.11
ATPAF1-202ENST00000371937 PDE6CP51160 858 aa28.23■■■□□ 2.11
ATPAF1-202ENST00000371937 LNX1Q8TBB1 728 aaPredicted RBP28.23■■■□□ 2.11
ATPAF1-202ENST00000371937 SECISBP2LQ93073 1101 aaKnown RBP28.23■■■□□ 2.11
ATPAF1-202ENST00000371937 FAXDC2Q96IV6 333 aa28.23■■■□□ 2.11
ATPAF1-202ENST00000371937 SNX27Q96L92 541 aa28.23■■■□□ 2.11
ATPAF1-202ENST00000371937 NIF3L1Q9GZT8 377 aa28.23■■■□□ 2.11
ATPAF1-202ENST00000371937 CHST12Q9NRB3 414 aa28.23■■■□□ 2.11
ATPAF1-202ENST00000371937 CITO14578 2027 aa28.23■■■□□ 2.11
ATPAF1-202ENST00000371937 GPR182O15218 404 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 KRT19P08727 400 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 UBXN11Q5T124 520 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 U2AF1L4Q8WU68 220 aaKnown RBP28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 KIF12Q96FN5 646 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 XYLT2Q9H1B5 865 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 STARD7Q9NQZ5 370 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 TRMT13Q9NUP7 481 aaKnown RBP28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 WBP1LQ9NX94 342 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 ITGA11Q9UKX5 1188 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 ST3GAL5Q9UNP4 418 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 DUSP10Q9Y6W6 482 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 CAND2O75155 1236 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 CYP11B1P15538 503 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 ATICP31939 592 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 TWF2Q6IBS0 349 aaKnown RBP28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 SLC47A2Q86VL8 602 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 OLIG1Q8TAK6 271 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 TSPAN18Q96SJ8 248 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 NXF3Q9H4D5 531 aaKnown RBP28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 SIX4Q9UIU6 781 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 NOCTQ9UK39 431 aaKnown RBP28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 INTUQ9ULD6 942 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 PHF24Q9UPV7 400 aa28.22■■■□□ 2.11
ATPAF1-202ENST00000371937 A0A0U1RQG5 324 aaPredicted RBP28.21■■■□□ 2.11
ATPAF1-202ENST00000371937 ITGB3P05106 788 aa28.21■■■□□ 2.11
ATPAF1-202ENST00000371937 ACO1P21399 889 aaKnown RBP28.21■■■□□ 2.11
ATPAF1-202ENST00000371937 RNF10Q8N5U6 811 aaKnown RBP28.21■■■□□ 2.11
ATPAF1-202ENST00000371937 SLC43A3Q8NBI5 491 aa28.21■■■□□ 2.11
ATPAF1-202ENST00000371937 SLC20A1Q8WUM9 679 aa28.21■■■□□ 2.11
ATPAF1-202ENST00000371937 SEZ6LQ9BYH1 1024 aa28.21■■■□□ 2.11
ATPAF1-202ENST00000371937 SEPT11Q9NVA2 429 aaKnown RBP28.21■■■□□ 2.11
ATPAF1-202ENST00000371937 HES2Q9Y543 173 aa28.21■■■□□ 2.11
ATPAF1-202ENST00000371937 PCDHB2Q9Y5E7 798 aa28.21■■■□□ 2.11
ATPAF1-202ENST00000371937 FRMPD3Q5JV73 1810 aa28.21■■■□□ 2.11
ATPAF1-202ENST00000371937 MACROD2A1Z1Q3 448 aa28.2■■■□□ 2.11
ATPAF1-202ENST00000371937 RECQL4O94761 1208 aa28.2■■■□□ 2.11
ATPAF1-202ENST00000371937 SCARA3Q6AZY7 606 aa28.2■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms