RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 PTGESO14684 152 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 SLC27A2O14975 620 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 ZBTB39O15060 712 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 EXTL3O43909 919 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 CNR2P34972 360 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 CREMQ03060 361 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 ZNF252P-AS1Q0IIN9 211 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 PFKFB3Q16875 520 aaPredicted RBP9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 TTC22Q5TAA0 569 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 WDR5BQ86VZ2 330 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 REXO1Q8N1G1 1221 aaKnown RBP9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 C12orf50Q8NA57 414 aaPredicted RBP9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 RNF149Q8NC42 400 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 CNNM3Q8NE01 707 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 ASB16Q96NS5 453 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 TRMT61BQ9BVS5 477 aaKnown RBP9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 SCNM1Q9BWG6 230 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 TEKT3Q9BXF9 490 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 CSRNP2Q9H175 543 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 DHX33Q9H6R0 707 aaKnown RBP9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 TRPV5Q9NQA5 729 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 AVENQ9NQS1 362 aaPredicted RBP9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 GIT1Q9Y2X7 761 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 SF3B1O75533 1304 aaKnown RBP eCLIP9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 TICRRQ7Z2Z1 1910 aa9.46□□□□□ -0.9
HMGB1P39-201ENST00000366304 VWA8A3KMH1 1905 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 GREB1Q4ZG55 1949 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 RALGAPA1Q6GYQ0 2036 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 hCG_1984214I3L0E3 225 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 FOXD2O60548 495 aaPredicted RBP9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 TDP2O95551 362 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 CAPNS1P04632 268 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 GJA1P17302 382 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 ARF4P18085 180 aaPredicted RBP9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 HOXA6P31267 233 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 ADD1P35611 737 aaKnown RBP9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 MBTD1Q05BQ5 628 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 GRIK3Q13003 919 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 PPP2R5DQ14738 602 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 RTN1Q16799 776 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 UVSSAQ2YD98 709 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 ZNF713Q8N859 430 aaPredicted RBP9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 TTC8Q8TAM2 541 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 ETNPPLQ8TBG4 499 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 PSPC1Q8WXF1 523 aaKnown RBP9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 ZCCHC14Q8WYQ9 949 aaKnown RBP9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 LRRC3BQ96PB8 259 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 LSG1Q9H089 658 aaKnown RBP9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 GLT8D2Q9H1C3 349 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 ZFP14Q9HCL3 533 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 XPNPEP1Q9NQW7 623 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 MTRRQ9UBK8 725 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 CDY1Q9Y6F8 540 aa9.45□□□□□ -0.9
HMGB1P39-201ENST00000366304 SLC38A8A6NNN8 435 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 C4orf47A7E2U8 309 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 I3L4J1 428 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 NR1I2O75469 434 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 SEC24AO95486 1093 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 NPTXRO95502 500 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 PSMC3P17980 439 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 FGFR3P22607 806 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 MPLP40238 635 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 PTENP60484 403 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 SH3PXD2AQ5TCZ1 1133 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 RNF43Q68DV7 783 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 KIAA1211LQ6NV74 962 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 FERMT3Q86UX7 667 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 RDM1Q8NG50 284 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 ASAP3Q8TDY4 903 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 GAB3Q8WWW8 586 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 IRF7Q92985 503 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 LOXL4Q96JB6 756 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 BBC3Q96PG8 261 aaPredicted RBP9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 CORO1BQ9BR76 489 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 RBM28Q9NW13 759 aaKnown RBP9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 SNTG2Q9NY99 539 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 TENM4Q6N022 2769 aa9.44□□□□□ -0.9
HMGB1P39-201ENST00000366304 TDRD15B5MCY1 1934 aaKnown RBP9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 ARHGEF37A1IGU5 675 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 TMEM8BA6NDV4 472 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 DCLK1O15075 740 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 RPP40O75818 363 aaKnown RBP9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 ERLIN2O94905 339 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 TKTP29401 623 aaKnown RBP9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 PSMC5P62195 406 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 EXOSC10Q01780 885 aaKnown RBP9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 KCNC4Q03721 635 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 TUSC3Q13454 348 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 CAPSQ13938 189 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 CCINQ13939 588 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 EMC2Q15006 297 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 NECTIN1Q15223 517 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 Q4G0T1 1027 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 CREB3L3Q68CJ9 461 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 NOTUMQ6P988 496 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 C3orf58Q8NDZ4 430 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 RUFY2Q8WXA3 655 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 SMARCD2Q92925 531 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 CCDC51Q96ER9 411 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 CEP170P1Q96L14 293 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms