RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 NLRC4Q9NPP4 1024 aa14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 TOPORSQ9NS56 1045 aaPredicted RBP14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 GTF2IRD1Q9UHL9 959 aa14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 GINS2Q9Y248 185 aa14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 GOLGA6BA6NDN3 693 aa14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 ZMYND10O75800 440 aa14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 ERLIN2O94905 339 aa14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 GTF2H1P32780 548 aa14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 TNFSF9P41273 254 aa14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 GCLMP48507 274 aa14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 MXI1P50539 228 aa14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 ASTE1Q2TB18 679 aaPredicted RBP14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 TDRD12Q587J7 1177 aaKnown RBP14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 MPZL3Q6UWV2 235 aa14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 TMEM40Q8WWA1 233 aa14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 GCOM2Q9BZD3 368 aaPredicted RBP14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 HMX1Q9NP08 348 aaPredicted RBP14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 RBAKQ9NYW8 714 aaPredicted RBP14.16□□□□□ -0.14
SQSTM1-201ENST00000360718 OGTO15294 1046 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 MYCP01106 439 aaPredicted RBP14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 DLATP10515 647 aaKnown RBP14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 GGCXP38435 758 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 NAP1L1P55209 391 aaKnown RBP14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 ZNF568Q3ZCX4 644 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 CFAP221Q4G0U5 840 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 KLHDC7AQ5VTJ3 777 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 RNF180Q86T96 592 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 CEP120Q8N960 986 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 CPB2Q96IY4 423 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 OSMRQ99650 979 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 LRRC1Q9BTT6 524 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 SIX2Q9NPC8 291 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 DAAM1Q9Y4D1 1078 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 PMM2O15305 246 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 OPA1O60313 960 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 UCHL3P15374 230 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 EPHB4P54760 987 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 MCL1Q07820 350 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 PSMD6Q15008 389 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 KRT39Q6A163 491 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 EMBQ6PCB8 327 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 GPIHBP1Q8IV16 184 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 FAM76AQ8TAV0 307 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 SPAG5Q96R06 1193 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 GANQ9H2C0 597 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 TMEM8AQ9HCN3 771 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 FBXL5Q9UKA1 691 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 AJAP1Q9UKB5 411 aaPredicted RBP14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 TNFSF13BQ9Y275 285 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 PTPN22Q9Y2R2 807 aa14.15□□□□□ -0.14
SQSTM1-201ENST00000360718 PTPRJQ12913 1337 aa14.14□□□□□ -0.15
SQSTM1-201ENST00000360718 CNTNAP2Q9UHC6 1331 aa14.14□□□□□ -0.15
SQSTM1-201ENST00000360718 TSPAN1O60635 241 aa14.14□□□□□ -0.15
SQSTM1-201ENST00000360718 ARF4P18085 180 aaPredicted RBP14.14□□□□□ -0.15
SQSTM1-201ENST00000360718 TNNI1P19237 187 aa14.14□□□□□ -0.15
SQSTM1-201ENST00000360718 ACLYP53396 1101 aa14.14□□□□□ -0.15
SQSTM1-201ENST00000360718 GFPT1Q06210 699 aaPredicted RBP14.14□□□□□ -0.15
SQSTM1-201ENST00000360718 FAM47CQ5HY64 1035 aa14.14□□□□□ -0.15
SQSTM1-201ENST00000360718 ALS2CLQ60I27 953 aa14.14□□□□□ -0.15
SQSTM1-201ENST00000360718 SND1Q7KZF4 910 aaKnown RBP eCLIP14.14□□□□□ -0.151e-6■□□□□ 8.1
SQSTM1-201ENST00000360718 NME8Q8N427 588 aa14.14□□□□□ -0.15
SQSTM1-201ENST00000360718 TMEM117Q9H0C3 514 aa14.14□□□□□ -0.15
SQSTM1-201ENST00000360718 INTS2Q9H0H0 1204 aaKnown RBP14.14□□□□□ -0.15
SQSTM1-201ENST00000360718 UNC93B1Q9H1C4 597 aa14.14□□□□□ -0.15
SQSTM1-201ENST00000360718 TRIP11Q15643 1979 aa14.14□□□□□ -0.15
SQSTM1-201ENST00000360718 GOLGA8KD6RF30 607 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 TNFRSF8P28908 595 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 PCBP1Q15365 356 aaKnown RBP eCLIP14.13□□□□□ -0.152e-6■■□□□ 13.3
SQSTM1-201ENST00000360718 MTFR1Q15390 333 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 HGSNATQ68CP4 663 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 LMBRD2Q68DH5 695 aaPredicted RBP14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 TAF2Q6P1X5 1199 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 GJB7Q6PEY0 223 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 LRRC31Q6UY01 552 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 APBB1IPQ7Z5R6 666 aaPredicted RBP14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 SRLQ86TD4 932 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 TMEM192Q8IY95 271 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 LMO3Q8TAP4 145 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 ZNF516Q92618 1163 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 CDT1Q9H211 546 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 PDZD7Q9H5P4 517 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 STIM2Q9P246 746 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 GOLGA6CA6NDK9 693 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 GOLGA6DP0CG33 693 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 MYBL2P10244 700 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 RFX1P22670 979 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 SURF1Q15526 300 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 SCARA3Q6AZY7 606 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 C8orf74Q6P047 294 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 FMNL3Q8IVF7 1028 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 IFT20Q8IY31 132 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 ZBTB9Q96C00 473 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 GDAP1L1Q96MZ0 367 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.13□□□□□ -0.152e-7■■■■■ 27.6
SQSTM1-201ENST00000360718 GOLGA6AQ9NYA3 693 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 APEX2Q9UBZ4 518 aa14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 RRP15Q9Y3B9 282 aaKnown RBP14.13□□□□□ -0.15
SQSTM1-201ENST00000360718 A6NNZ2 444 aa14.12□□□□□ -0.15
SQSTM1-201ENST00000360718 MYO1CO00159 1063 aa14.12□□□□□ -0.15
SQSTM1-201ENST00000360718 MEFVO15553 781 aaPredicted RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms