RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 KLRK1P26718 216 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 ATP2C1P98194 919 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-201ENST00000359947 ORC1Q13415 861 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 ZNF34Q8IZ26 560 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 TSSK1BQ9BXA7 367 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 CYP4F11Q9HBI6 524 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 C3orf70A6NLC5 250 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-201ENST00000359947 EPB42P16452 691 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 ACTR2P61160 394 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 SMTNL2Q2TAL5 461 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 MMS22LQ6ZRQ5 1243 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 RFX8Q6ZV50 586 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 C16orf86Q6ZW13 317 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 FBXO16Q8IX29 292 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-201ENST00000359947 FBXO41Q8TF61 875 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 ARL8AQ96BM9 186 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 LCMT1Q9UIC8 334 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 ARIH2O95376 493 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 HMOX2P30519 316 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 DCP1BQ8IZD4 617 aaKnown RBP16.4■□□□□ 0.22
PTPRF-201ENST00000359947 CCDC188H7C350 402 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 SLC8A1P32418 973 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 PMS2P54278 862 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 NCAPHQ15003 741 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 ELMO2Q96JJ3 720 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 WNT8AQ9H1J5 351 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 HMGB1P1B2RPK0 211 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-201ENST00000359947 ENDOD1O94919 500 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 VTNP04004 478 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 LAMC2Q13753 1193 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 SGSM1Q2NKQ1 1148 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 IZUMO3Q5VZ72 239 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 COL23A1Q86Y22 540 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-201ENST00000359947 NUDCD3Q8IVD9 361 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 TRIM48Q8IWZ4 208 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 TBC1D19Q8N5T2 526 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 RPS6P62753 249 aaKnown RBP16.39■□□□□ 0.22
PTPRF-201ENST00000359947 LRRC14Q15048 493 aa16.39■□□□□ 0.22
PTPRF-201ENST00000359947 SF3B3Q15393 1217 aaKnown RBP16.39■□□□□ 0.22
PTPRF-201ENST00000359947 FSCBQ5H9T9 825 aa16.39■□□□□ 0.22
PTPRF-201ENST00000359947 CHSY1Q86X52 802 aa16.39■□□□□ 0.22
PTPRF-201ENST00000359947 KDM4CQ9H3R0 1056 aa16.39■□□□□ 0.22
PTPRF-201ENST00000359947 ZFATQ9P243 1243 aa16.39■□□□□ 0.22
PTPRF-201ENST00000359947 PKP3Q9Y446 797 aa16.39■□□□□ 0.22
PTPRF-201ENST00000359947 SYCE1LA8MT33 242 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 EEF1DP29692 281 aaKnown RBP16.39■□□□□ 0.21
PTPRF-201ENST00000359947 CDH18Q13634 790 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 TDRD10Q5VZ19 366 aaKnown RBP16.39■□□□□ 0.21
PTPRF-201ENST00000359947 CCDC90BQ9GZT6 254 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 RUBCNLQ9H714 662 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 MAD2L2Q9UI95 211 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 PQBP1O60828 265 aaKnown RBP16.39■□□□□ 0.21
PTPRF-201ENST00000359947 CASP8Q14790 479 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 MORC4Q8TE76 937 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 SLITRK1Q96PX8 696 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 GPR63Q9BZJ6 419 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 TRIM33Q9UPN9 1127 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 SLC30A1Q9Y6M5 507 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 TTC26A0AVF1 554 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 GYG2O15488 501 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 ASAP2O43150 1006 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 ITGB3P05106 788 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 NPEPPSP55786 919 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 SNX31Q8N9S9 440 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 GTF3C2Q8WUA4 911 aaPredicted RBP16.39■□□□□ 0.21
PTPRF-201ENST00000359947 MXRA8Q9BRK3 442 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 NT5C1AQ9BXI3 368 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 KCNH7Q9NS40 1196 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.39■□□□□ 0.21
PTPRF-201ENST00000359947 MEFVO15553 781 aaPredicted RBP16.39■□□□□ 0.21
PTPRF-201ENST00000359947 HBP1O60381 514 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 RPS12P25398 132 aaKnown RBP16.39■□□□□ 0.21
PTPRF-201ENST00000359947 AARSP49588 968 aaKnown RBP eCLIP16.39■□□□□ 0.213e-8■■■■■ 82.4
PTPRF-201ENST00000359947 MDM2Q00987 491 aaPredicted RBP16.39■□□□□ 0.21
PTPRF-201ENST00000359947 FRMD5Q7Z6J6 570 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 OSBPL9Q96SU4 736 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 APOL5Q9BWW9 433 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 ASPSCR1Q9BZE9 553 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 ERCC6L2Q5T890 1561 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 QRICH2Q9H0J4 1663 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 A0A087WUV0 522 aaPredicted RBP16.39■□□□□ 0.21
PTPRF-201ENST00000359947 SHC4Q6S5L8 630 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 CPB2Q96IY4 423 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 DNAJC7Q99615 494 aa16.39■□□□□ 0.21
PTPRF-201ENST00000359947 CCDC151A5D8V7 595 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 B3GAT3O94766 335 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 SGO1Q5FBB7 561 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 CYP4A22Q5TCH4 519 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 ALS2CLQ60I27 953 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 RBBP8NLQ8NC74 664 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-201ENST00000359947 CHST13Q8NET6 341 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 SNF8Q96H20 258 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 PRMT6Q96LA8 375 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-201ENST00000359947 TMEM117Q9H0C3 514 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 GBA2Q9HCG7 927 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-201ENST00000359947 ADARB2Q9NS39 739 aaKnown RBP16.38■□□□□ 0.21
PTPRF-201ENST00000359947 RAD18Q9NS91 495 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 ADGRA2Q96PE1 1338 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 HPDLQ96IR7 371 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 SENP7Q9BQF6 1050 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms