RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 SHC3Q92529 594 aa20.1■□□□□ 0.81
CLN3-204ENST00000357857 C16orf45Q96MC5 204 aaPredicted RBP20.1■□□□□ 0.81
CLN3-204ENST00000357857 APOBEC3GQ9HC16 384 aaKnown RBP20.1■□□□□ 0.81
CLN3-204ENST00000357857 RECQL4O94761 1208 aa20.1■□□□□ 0.81
CLN3-204ENST00000357857 CLSTN1O94985 981 aa20.1■□□□□ 0.81
CLN3-204ENST00000357857 LCA5LO95447 670 aa20.1■□□□□ 0.81
CLN3-204ENST00000357857 ASS1P00966 412 aaKnown RBP20.1■□□□□ 0.81
CLN3-204ENST00000357857 HSPA1AP0DMV8 641 aaKnown RBP20.1■□□□□ 0.81
CLN3-204ENST00000357857 HSPA1BP0DMV9 641 aaKnown RBP20.1■□□□□ 0.81
CLN3-204ENST00000357857 GHRP10912 638 aa20.1■□□□□ 0.81
CLN3-204ENST00000357857 CDK7P50613 346 aa20.1■□□□□ 0.81
CLN3-204ENST00000357857 MYL6P60660 151 aa20.1■□□□□ 0.81
CLN3-204ENST00000357857 SGSM1Q2NKQ1 1148 aa20.1■□□□□ 0.81
CLN3-204ENST00000357857 FBXO46Q6PJ61 603 aaPredicted RBP20.1■□□□□ 0.81
CLN3-204ENST00000357857 ZNF571Q7Z3V5 609 aaPredicted RBP20.1■□□□□ 0.81
CLN3-204ENST00000357857 APOL6Q9BWW8 343 aa20.1■□□□□ 0.81
CLN3-204ENST00000357857 AGO3Q9H9G7 860 aaKnown RBP20.1■□□□□ 0.81
CLN3-204ENST00000357857 ERVK-5Q9HDB9 667 aa20.1■□□□□ 0.81
CLN3-204ENST00000357857 DERAQ9Y315 318 aa20.1■□□□□ 0.81
CLN3-204ENST00000357857 OFD1O75665 1012 aa20.09■□□□□ 0.81
CLN3-204ENST00000357857 CKBP12277 381 aa20.09■□□□□ 0.81
CLN3-204ENST00000357857 ANXA13P27216 316 aa20.09■□□□□ 0.81
CLN3-204ENST00000357857 PAK2Q13177 524 aa20.09■□□□□ 0.81
CLN3-204ENST00000357857 LPIN1Q14693 890 aa20.09■□□□□ 0.81
CLN3-204ENST00000357857 PTPN14Q15678 1187 aa20.09■□□□□ 0.81
CLN3-204ENST00000357857 SCARA3Q6AZY7 606 aa20.09■□□□□ 0.81
CLN3-204ENST00000357857 NYAP1Q6ZVC0 841 aa20.09■□□□□ 0.81
CLN3-204ENST00000357857 FAM71AQ8IYT1 594 aa20.09■□□□□ 0.81
CLN3-204ENST00000357857 C1orf127Q8N9H9 656 aa20.09■□□□□ 0.81
CLN3-204ENST00000357857 KIF12Q96FN5 646 aa20.09■□□□□ 0.81
CLN3-204ENST00000357857 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.09■□□□□ 0.81
CLN3-204ENST00000357857 PADI3Q9ULW8 664 aa20.09■□□□□ 0.81
CLN3-204ENST00000357857 IPPQ9Y573 584 aa20.09■□□□□ 0.81
CLN3-204ENST00000357857 NUB1Q9Y5A7 615 aa20.09■□□□□ 0.81
CLN3-204ENST00000357857 SQORQ9Y6N5 450 aa20.09■□□□□ 0.81
CLN3-204ENST00000357857 RBAK-RBAKDNI3L0D1 243 aa20.08■□□□□ 0.81
CLN3-204ENST00000357857 ZNF263O14978 683 aa20.08■□□□□ 0.81
CLN3-204ENST00000357857 TBXAS1P24557 533 aaPredicted RBP20.08■□□□□ 0.81
CLN3-204ENST00000357857 CD52P31358 61 aa20.08■□□□□ 0.81
CLN3-204ENST00000357857 USP8P40818 1118 aa20.08■□□□□ 0.81
CLN3-204ENST00000357857 CYP27A1Q02318 531 aa20.08■□□□□ 0.81
CLN3-204ENST00000357857 GFPT1Q06210 699 aaPredicted RBP20.08■□□□□ 0.81
CLN3-204ENST00000357857 CUL2Q13617 745 aa20.08■□□□□ 0.81
CLN3-204ENST00000357857 KIAA1328Q86T90 577 aa20.08■□□□□ 0.81
CLN3-204ENST00000357857 VPS36Q86VN1 386 aa20.08■□□□□ 0.81
CLN3-204ENST00000357857 USP38Q8NB14 1042 aa20.08■□□□□ 0.81
CLN3-204ENST00000357857 SMG8Q8ND04 991 aaKnown RBP20.08■□□□□ 0.81
CLN3-204ENST00000357857 OSBPL7Q9BZF2 842 aa20.08■□□□□ 0.81
CLN3-204ENST00000357857 SIX4Q9UIU6 781 aa20.08■□□□□ 0.81
CLN3-204ENST00000357857 KRT19P08727 400 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 ZSCAN20P17040 1043 aaPredicted RBP20.07■□□□□ 0.8
CLN3-204ENST00000357857 AKAP5P24588 427 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 SLC18A3Q16572 532 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 ZNF699Q32M78 642 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 DNTTIP2Q5QJE6 756 aaKnown RBP20.07■□□□□ 0.8
CLN3-204ENST00000357857 ALKAL1Q6UXT8 129 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 JAKMIP2Q96AA8 810 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 ZNF333Q96JL9 665 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 CNTN3Q9P232 1028 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 PARP2Q9UGN5 583 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 A0A0U1RQJ8 604 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 ITGB3P05106 788 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 FAM126BQ8IXS8 530 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 CAGE1Q8TC20 777 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 ATRIPQ8WXE1 791 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 TAF4BQ92750 862 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 ARID3AQ99856 593 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 CRISPLD2Q9H0B8 497 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 XYLT2Q9H1B5 865 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 RNF39Q9H2S5 420 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 LZTFL1Q9NQ48 299 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 FAM105AQ9NUU6 356 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 DPP3Q9NY33 737 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 ADAMTS1Q9UHI8 967 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 ITGA11Q9UKX5 1188 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 PCDHB2Q9Y5E7 798 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 PCDHA13Q9Y5I0 950 aa20.07■□□□□ 0.8
CLN3-204ENST00000357857 UMODL1Q5DID0 1318 aa20.06■□□□□ 0.8
CLN3-204ENST00000357857 A0A087X0T9 212 aa20.06■□□□□ 0.8
CLN3-204ENST00000357857 FAM228BP0C875 321 aa20.06■□□□□ 0.8
CLN3-204ENST00000357857 TNNT1P13805 278 aa20.06■□□□□ 0.8
CLN3-204ENST00000357857 ARHGAP29Q52LW3 1261 aa20.06■□□□□ 0.8
CLN3-204ENST00000357857 TRAF7Q6Q0C0 670 aa20.06■□□□□ 0.8
CLN3-204ENST00000357857 ZMAT2Q96NC0 199 aaKnown RBP20.06■□□□□ 0.8
CLN3-204ENST00000357857 TSPAN18Q96SJ8 248 aa20.06■□□□□ 0.8
CLN3-204ENST00000357857 IFIH1Q9BYX4 1025 aaKnown RBP20.06■□□□□ 0.8
CLN3-204ENST00000357857 NIF3L1Q9GZT8 377 aa20.06■□□□□ 0.8
CLN3-204ENST00000357857 CXCL16Q9H2A7 254 aa20.06■□□□□ 0.8
CLN3-204ENST00000357857 KIF2AO00139 706 aaPredicted RBP20.05■□□□□ 0.8
CLN3-204ENST00000357857 CYP26A1O43174 497 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 KRT5P13647 590 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 GUCY2FP51841 1108 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 VAV2P52735 878 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 LBX1P52954 281 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 BMS1Q14692 1282 aaKnown RBP20.05■□□□□ 0.8
CLN3-204ENST00000357857 PKN2Q16513 984 aaKnown RBP20.05■□□□□ 0.8
CLN3-204ENST00000357857 HACE1Q8IYU2 909 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 CXorf38Q8TB03 319 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 U2AF1L4Q8WU68 220 aaKnown RBP20.05■□□□□ 0.8
CLN3-204ENST00000357857 SYT11Q9BT88 431 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms