RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 CBX2Q14781 532 aaPredicted RBP7.8□□□□□ -1.16
VPS13A-201ENST00000355766 PLCL1Q15111 1095 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 STK38Q15208 465 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 ZNF618Q5T7W0 954 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 ARL6IP4Q66PJ3 421 aaKnown RBP7.8□□□□□ -1.16
VPS13A-201ENST00000355766 BTNL9Q6UXG8 535 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 CCDC73Q6ZRK6 1079 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 RASGRP2Q7LDG7 609 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 SULF2Q8IWU5 870 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 MRPS27Q92552 414 aaKnown RBP7.8□□□□□ -1.16
VPS13A-201ENST00000355766 KAT2BQ92831 832 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 CCDC34Q96HJ3 373 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 TIGD1Q96MW7 591 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 NAP1L4Q99733 375 aaKnown RBP7.8□□□□□ -1.16
VPS13A-201ENST00000355766 MAF1Q9H063 256 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 LMAN2LQ9H0V9 348 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 C6orf50Q9HD87 102 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 CD207Q9UJ71 328 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 PCOLCE2Q9UKZ9 415 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 PLXNA3P51805 1871 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 DMDP11532 3685 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 DCHS1Q96JQ0 3298 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 BTBD18B2RXH4 712 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 LOC730098B7Z3J9 87 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 C5orf67F2Z3F1 127 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 H0Y858 1186 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 ZBTB5O15062 677 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 CYTH3O43739 400 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 CUTAO60888 179 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 PAPLNO95428 1278 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 EYA4O95677 639 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 ARNTP27540 789 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 AVPR2P30518 371 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 CTNNB1P35222 781 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 ID4P47928 161 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 ME1P48163 572 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 NLRP5P59047 1200 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 PTPAQ15257 358 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 SF3A1Q15459 793 aaKnown RBP7.79□□□□□ -1.16
VPS13A-201ENST00000355766 WWC2Q6AWC2 1192 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 LRSAM1Q6UWE0 723 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 NXPE4Q6UWF7 544 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 KCTD1Q719H9 257 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 BLIDQ8IZY5 108 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 C7orf31Q8N865 590 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 SMRP1Q8NCR6 262 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 DBF4BQ8NFT6 615 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 NETO1Q8TDF5 533 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 AFG1LQ8WV93 481 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 MISP3Q96FF7 219 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 MSLNLQ96KJ4 702 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 AIFM3Q96NN9 605 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 MPHOSPH6Q99547 160 aaKnown RBP7.79□□□□□ -1.16
VPS13A-201ENST00000355766 C11orf84Q9BUA3 381 aaPredicted RBP7.79□□□□□ -1.16
VPS13A-201ENST00000355766 KATNAL1Q9BW62 490 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 NUP62CLQ9H1M0 184 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 RANBP17Q9H2T7 1088 aaKnown RBP7.79□□□□□ -1.16
VPS13A-201ENST00000355766 CLSTN2Q9H4D0 955 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 TLR9Q9NR96 1032 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 HDAC6Q9UBN7 1215 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 ZFHX4Q86UP3 3567 aa7.79□□□□□ -1.16
VPS13A-201ENST00000355766 CACNA1HO95180 2353 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 SPTBN4Q9H254 2564 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 GRM6O15303 877 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 LINC01565O15544 149 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 KINO60870 393 aaKnown RBP7.78□□□□□ -1.16
VPS13A-201ENST00000355766 F2P00734 622 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 GH1P01241 217 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 LINC00271P0C7V0 271 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 GTF2F1P35269 517 aaKnown RBP eCLIP7.78□□□□□ -1.16
VPS13A-201ENST00000355766 PRPHP41219 470 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 NBL1P41271 181 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 NDUFV1P49821 464 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 GUCY1B3Q02153 619 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 ARHGAP1Q07960 439 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 PDE4CQ08493 712 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 FZD5Q13467 585 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 DSC3Q14574 896 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 SLC35G1Q2M3R5 365 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.78□□□□□ -1.16
VPS13A-201ENST00000355766 PLEKHG4Q58EX7 1191 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 ZC3H12AQ5D1E8 599 aaKnown RBP7.78□□□□□ -1.16
VPS13A-201ENST00000355766 AXDND1Q5T1B0 1012 aaPredicted RBP7.78□□□□□ -1.16
VPS13A-201ENST00000355766 CCDC62Q6P9F0 684 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 REXO1Q8N1G1 1221 aaKnown RBP7.78□□□□□ -1.16
VPS13A-201ENST00000355766 SAMD3Q8N6K7 520 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 DNERQ8NFT8 737 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 TOP1MTQ969P6 601 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 ISL2Q96A47 359 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 PGBD1Q96JS3 809 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 DUSP23Q9BVJ7 150 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 VPS54Q9P1Q0 977 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 USP25Q9UHP3 1055 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 DCTN4Q9UJW0 460 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 RWDD3Q9Y3V2 267 aa7.78□□□□□ -1.16
VPS13A-201ENST00000355766 RALGAPA2Q2PPJ7 1873 aa7.77□□□□□ -1.17
VPS13A-201ENST00000355766 CCDC194A0A1B0GVG4 234 aa7.77□□□□□ -1.17
VPS13A-201ENST00000355766 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.77□□□□□ -1.17
VPS13A-201ENST00000355766 RSPH10B2B2RC85 870 aa7.77□□□□□ -1.17
VPS13A-201ENST00000355766 HAS3O00219 553 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms