RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 NLRP3Q96P20 1036 aa13.22□□□□□ -0.29
COL6A3-203ENST00000353578 CCNJLQ8IV13 435 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 OSCP1Q8WVF1 389 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 CARD14Q9BXL6 1004 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 CCDC162PA2VCL2 907 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 RSRC2Q7L4I2 434 aaKnown RBP13.21□□□□□ -0.29
COL6A3-203ENST00000353578 COPS6Q7L5N1 327 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 TRAPPC11Q7Z392 1133 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 ARHGEF19Q8IW93 802 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 TCAIMQ8N3R3 496 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 RBM15Q96T37 977 aaKnown RBP eCLIP13.21□□□□□ -0.29
COL6A3-203ENST00000353578 CYP39A1Q9NYL5 469 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 RTCBQ9Y3I0 505 aaKnown RBP13.21□□□□□ -0.29
COL6A3-203ENST00000353578 CCDC182A6NF36 153 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 HNRNPDLO14979 420 aaKnown RBP13.21□□□□□ -0.29
COL6A3-203ENST00000353578 PDCD4Q53EL6 469 aaKnown RBP13.21□□□□□ -0.29
COL6A3-203ENST00000353578 RHPN2Q8IUC4 686 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.21□□□□□ -0.29
COL6A3-203ENST00000353578 MNTQ99583 582 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 ATP1A3P13637 1013 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 ADCY1Q08828 1119 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 CALN1Q9BXU9 219 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 TUFT1Q9NNX1 390 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 STARD13Q9Y3M8 1113 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 BTN3A3O00478 584 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 ROR1Q01973 937 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 FAM83BQ5T0W9 1011 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 NAT9Q9BTE0 207 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 NUP85Q9BW27 656 aa13.21□□□□□ -0.29
COL6A3-203ENST00000353578 TCF3P15923 654 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 ACAT1P24752 427 aaKnown RBP13.21□□□□□ -0.3
COL6A3-203ENST00000353578 TYK2P29597 1187 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 PRKAA2P54646 552 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 TSNQ15631 228 aaKnown RBP13.21□□□□□ -0.3
COL6A3-203ENST00000353578 RABL6Q3YEC7 729 aaPredicted RBP13.21□□□□□ -0.3
COL6A3-203ENST00000353578 TSHZ1Q6ZSZ6 1077 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 EYA3Q99504 573 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 ZWILCHQ9H900 591 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 AASDHPPTQ9NRN7 309 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 MAP3K20Q9NYL2 800 aaKnown RBP13.21□□□□□ -0.3
COL6A3-203ENST00000353578 GPATCH8Q9UKJ3 1502 aaKnown RBP13.21□□□□□ -0.3
COL6A3-203ENST00000353578 SPATA31E1Q6ZUB1 1445 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 SNAP91O60641 907 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 CIAO1O76071 339 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 PSMA2P25787 234 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 LRPAP1P30533 357 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 PLS1Q14651 629 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 BLOC1S5Q8TDH9 187 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 DYRK4Q9NR20 520 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 PCDHGB4Q9UN71 923 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 PRPF3O43395 683 aaKnown RBP13.21□□□□□ -0.3
COL6A3-203ENST00000353578 FRMD5Q7Z6J6 570 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 KBTBD8Q8NFY9 601 aa13.21□□□□□ -0.3
COL6A3-203ENST00000353578 RGS5O15539 181 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 WARSP23381 471 aaKnown RBP13.2□□□□□ -0.3
COL6A3-203ENST00000353578 MAGEA8P43361 318 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 RPS6KA3P51812 740 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 PUDPQ08623 228 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 PDIA2Q13087 525 aaKnown RBP13.2□□□□□ -0.3
COL6A3-203ENST00000353578 ZNF846Q147U1 533 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 SNX30Q5VWJ9 437 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 OTUD7AQ8TE49 926 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-203ENST00000353578 XAGE2Q96GT9 111 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 LRRC53A6NM62 1247 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 UFL1O94874 794 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 ATP1A1P05023 1023 aaKnown RBP13.2□□□□□ -0.3
COL6A3-203ENST00000353578 PPARDQ03181 441 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 IMPG1Q17R60 797 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 IZUMO3Q5VZ72 239 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 GUF1Q8N442 669 aaKnown RBP13.2□□□□□ -0.3
COL6A3-203ENST00000353578 ARHGEF3Q9NR81 526 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 ATP1A4Q13733 1029 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 TPH2Q8IWU9 490 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 RCOR2Q8IZ40 523 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 DIS3LQ8TF46 1054 aaKnown RBP13.2□□□□□ -0.3
COL6A3-203ENST00000353578 RORBQ92753 470 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 RIC8BQ9NVN3 520 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 CD109Q6YHK3 1445 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 PPP1R18Q6NYC8 613 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 PEX5LQ8IYB4 626 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 ULK2Q8IYT8 1036 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 VPS37AQ8NEZ2 397 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.2□□□□□ -0.3
COL6A3-203ENST00000353578 TLR7Q9NYK1 1049 aaKnown RBP13.2□□□□□ -0.3
COL6A3-203ENST00000353578 ANAPC7Q9UJX3 599 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 PHGDHO43175 533 aaKnown RBP13.2□□□□□ -0.3
COL6A3-203ENST00000353578 PABPC1P11940 636 aaKnown RBP13.2□□□□□ -0.3
COL6A3-203ENST00000353578 USP38Q8NB14 1042 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 ZNF564Q8TBZ8 553 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-203ENST00000353578 HSPH1Q92598 858 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 TEKT3Q9BXF9 490 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 ZBTB3Q9H5J0 574 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 USE1Q9NZ43 259 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 ARHGEF5Q12774 1597 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 SNRPAP09012 282 aaKnown RBP13.2□□□□□ -0.3
COL6A3-203ENST00000353578 MYL4P12829 197 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 GEMIN4P57678 1058 aaKnown RBP13.2□□□□□ -0.3
COL6A3-203ENST00000353578 PLEKHA8Q96JA3 519 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 LRRC1Q9BTT6 524 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 SPRTNQ9H040 489 aaPredicted RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms