RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 MMS22LQ6ZRQ5 1243 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 ENOSF1Q7L5Y1 443 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 ZBTB33Q86T24 672 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 PPM1KQ8N3J5 372 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 EIF1ADQ8N9N8 165 aaKnown RBP13.76□□□□□ -0.21
CLK3-201ENST00000345005 SPATA4Q8NEY3 305 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 ZBTB10Q96DT7 871 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 PTPRHQ9HD43 1115 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 STIM2Q9P246 746 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 NAGPAQ9UK23 515 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 GRID2IPA4D2P6 1211 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 ABLIM1O14639 778 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 SRGAP2O75044 1071 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 LRRN2O75325 713 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 F2P00734 622 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 HARSP12081 509 aaKnown RBP13.76□□□□□ -0.21
CLK3-201ENST00000345005 BRD2P25440 801 aaKnown RBP13.76□□□□□ -0.21
CLK3-201ENST00000345005 KIAA0753Q2KHM9 967 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 CFAP221Q4G0U5 840 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 WDR44Q5JSH3 913 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 MARCH8Q5T0T0 291 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 CCDC91Q7Z6B0 441 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 BRSK2Q8IWQ3 736 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 NOX5Q96PH1 765 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 ZIC5Q96T25 663 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 GGA2Q9UJY4 613 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 INTUQ9ULD6 942 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 TNFSF13BQ9Y275 285 aa13.76□□□□□ -0.21
CLK3-201ENST00000345005 NRCAMQ92823 1304 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 CNTNAP2Q9UHC6 1331 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 CASP8AP2Q9UKL3 1982 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 A0A087WZ62 844 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 BTNL10A8MVZ5 291 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 FAM189A1O60320 539 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 ERLIN2O94905 339 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 TNFAIP3P21580 790 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 NOGQ13253 232 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 BIRC3Q13489 604 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 ZNF568Q3ZCX4 644 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 ZBTB41Q5SVQ8 909 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 FOXR1Q6PIV2 292 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 SND1Q7KZF4 910 aaKnown RBP eCLIP13.75□□□□□ -0.21
CLK3-201ENST00000345005 ZNF410Q86VK4 478 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 REM2Q8IYK8 340 aaPredicted RBP13.75□□□□□ -0.21
CLK3-201ENST00000345005 FAM71AQ8IYT1 594 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 SLC30A5Q8TAD4 765 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 HELQQ8TDG4 1101 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 SHC3Q92529 594 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 ZNF668Q96K58 619 aaPredicted RBP13.75□□□□□ -0.21
CLK3-201ENST00000345005 KREMEN1Q96MU8 473 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 OSBPL9Q96SU4 736 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 FDXACB1Q9BRP7 624 aaPredicted RBP13.75□□□□□ -0.21
CLK3-201ENST00000345005 MINDY3Q9H8M7 445 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 C1orf112Q9NSG2 853 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 NENFQ9UMX5 172 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 CITO14578 2027 aa13.75□□□□□ -0.21
CLK3-201ENST00000345005 DDX3XO00571 662 aaKnown RBP eCLIP13.74□□□□□ -0.21
CLK3-201ENST00000345005 HLA-DRAP01903 254 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 TFRCP02786 760 aaKnown RBP13.74□□□□□ -0.21
CLK3-201ENST00000345005 VTNP04004 478 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 PIK3CAP42336 1068 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 PSMC4P43686 418 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 GCNT1Q02742 428 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 TDRD10Q5VZ19 366 aaKnown RBP13.74□□□□□ -0.21
CLK3-201ENST00000345005 CYP4F22Q6NT55 531 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 NFRKBQ6P4R8 1299 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 WDR49Q8IV35 697 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 CD302Q8IX05 232 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 KIAA0319LQ8IZA0 1049 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 U2AF1L4Q8WU68 220 aaKnown RBP13.74□□□□□ -0.21
CLK3-201ENST00000345005 AGPAT1Q99943 283 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 SYT11Q9BT88 431 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 CREBZFQ9NS37 354 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 SETD4Q9NVD3 440 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 RNF216Q9NWF9 866 aaPredicted RBP13.74□□□□□ -0.21
CLK3-201ENST00000345005 CPSF3Q9UKF6 684 aaKnown RBP13.74□□□□□ -0.21
CLK3-201ENST00000345005 KIAA0754O94854 1291 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 MOCS3O95396 460 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 H2AFZP0C0S5 128 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 SMIM10L2AP0DMW4 78 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 SMIM10L2BP0DMW5 78 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 AKR1A1P14550 325 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 CTGFP29279 349 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 NAP1L1P55209 391 aaKnown RBP13.74□□□□□ -0.21
CLK3-201ENST00000345005 WNT7BP56706 349 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 LACTBP83111 547 aaPredicted RBP13.74□□□□□ -0.21
CLK3-201ENST00000345005 POU5F1Q01860 360 aaKnown RBP13.74□□□□□ -0.21
CLK3-201ENST00000345005 PAK2Q13177 524 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 MFSD10Q14728 455 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 KYAT1Q16773 422 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 SEZ6Q53EL9 994 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 MFSD14CQ5VZR4 134 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 LMBRD2Q68DH5 695 aaPredicted RBP13.74□□□□□ -0.21
CLK3-201ENST00000345005 H2AFVQ71UI9 128 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 YTHDF3Q7Z739 585 aaKnown RBP13.74□□□□□ -0.21
CLK3-201ENST00000345005 PACS2Q86VP3 889 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 MREGQ8N565 214 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 CEP120Q8N960 986 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 BCAS4Q8TDM0 211 aa13.74□□□□□ -0.21
CLK3-201ENST00000345005 LMBR1Q8WVP7 490 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms