RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 PRPF4O43172 522 aaKnown RBP eCLIP14.25□□□□□ -0.13
RFFL-201ENST00000315249 BEX3Q00994 111 aa14.25□□□□□ -0.13
RFFL-201ENST00000315249 RASSF3Q86WH2 238 aa14.25□□□□□ -0.13
RFFL-201ENST00000315249 RNF14Q9UBS8 474 aa14.25□□□□□ -0.13
RFFL-201ENST00000315249 CDH18Q13634 790 aa14.25□□□□□ -0.13
RFFL-201ENST00000315249 ACVR2BQ13705 512 aa14.25□□□□□ -0.13
RFFL-201ENST00000315249 SCG3Q8WXD2 468 aaKnown RBP14.25□□□□□ -0.13
RFFL-201ENST00000315249 SNX24Q9Y343 169 aa14.25□□□□□ -0.13
RFFL-201ENST00000315249 ARHGEF28Q8N1W1 1705 aaKnown RBP14.25□□□□□ -0.13
RFFL-201ENST00000315249 CCDC78A2IDD5 438 aa14.25□□□□□ -0.13
RFFL-201ENST00000315249 NR1H3Q13133 447 aa14.25□□□□□ -0.13
RFFL-201ENST00000315249 FSCN1Q16658 493 aaKnown RBP14.25□□□□□ -0.13
RFFL-201ENST00000315249 GMCL1P1Q8NEA9 526 aa14.25□□□□□ -0.13
RFFL-201ENST00000315249 RDM1Q8NG50 284 aa14.25□□□□□ -0.13
RFFL-201ENST00000315249 CFAP61Q8NHU2 1237 aa14.25□□□□□ -0.13
RFFL-201ENST00000315249 TRIM54Q9BYV2 358 aa14.25□□□□□ -0.13
RFFL-201ENST00000315249 EHD4Q9H223 541 aa14.25□□□□□ -0.13
RFFL-201ENST00000315249 ABHD16BQ9H3Z7 469 aa14.25□□□□□ -0.13
RFFL-201ENST00000315249 MIF4GDA9UHW6 222 aaKnown RBP14.24□□□□□ -0.13
RFFL-201ENST00000315249 VWA5AO00534 786 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 ORC1Q13415 861 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 PDZD8Q8NEN9 1154 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 MRPS31Q92665 395 aaKnown RBP14.24□□□□□ -0.13
RFFL-201ENST00000315249 C7orf25Q9BPX7 421 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 TEX33O43247 280 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 RTN2O75298 545 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 EIF3EP60228 445 aaKnown RBP14.24□□□□□ -0.13
RFFL-201ENST00000315249 STILQ15468 1287 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 CTXN3Q4LDR2 81 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 PODXLO00592 558 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 CYB561D2O14569 222 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 NKRFO15226 690 aaKnown RBP eCLIP14.24□□□□□ -0.135e-10■■■□□ 17.6
RFFL-201ENST00000315249 TTI1O43156 1089 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 ALDH8A1Q9H2A2 487 aaPredicted RBP14.24□□□□□ -0.13
RFFL-201ENST00000315249 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.24□□□□□ -0.13
RFFL-201ENST00000315249 CASQ2O14958 399 aaPredicted RBP14.24□□□□□ -0.13
RFFL-201ENST00000315249 EPHB4P54760 987 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.24□□□□□ -0.13
RFFL-201ENST00000315249 MAP3K21Q5TCX8 1036 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 ADCK2Q7Z695 626 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 DHX40Q8IX18 779 aaKnown RBP14.24□□□□□ -0.13
RFFL-201ENST00000315249 KIAA1683Q9H0B3 1180 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 SLC25A13Q9UJS0 675 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 ITM2BQ9Y287 266 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 A0A087WZ62 844 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 INHBEP58166 350 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 GRIK4Q16099 956 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 DNERQ8NFT8 737 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 FDXACB1Q9BRP7 624 aaPredicted RBP14.24□□□□□ -0.13
RFFL-201ENST00000315249 CAPS2Q9BXY5 557 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 COG4Q9H9E3 785 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 MBL2P11226 248 aaPredicted RBP14.24□□□□□ -0.13
RFFL-201ENST00000315249 PNPLA4P41247 253 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 CDKL3Q8IVW4 592 aaPredicted RBP14.24□□□□□ -0.13
RFFL-201ENST00000315249 ZFPM1Q8IX07 1006 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 MAML1Q92585 1016 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 TAF6LQ9Y6J9 622 aa14.24□□□□□ -0.13
RFFL-201ENST00000315249 FGFR4P22455 802 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 GTF2H1P32780 548 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 KCNA1Q09470 495 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 NOGQ13253 232 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 TTC31Q49AM3 519 aaPredicted RBP14.23□□□□□ -0.13
RFFL-201ENST00000315249 SYTL3Q4VX76 610 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 PCNX4Q63HM2 1172 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 POTEAQ6S8J7 498 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 PPP1R13LQ8WUF5 828 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 DRC3Q9H069 523 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 GTSE1Q9NYZ3 720 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 TTC26A0AVF1 554 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 TMEM247A6NEH6 219 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 MYL4P12829 197 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 ARID5BQ14865 1188 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 SLC30A10Q6XR72 485 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 MMS22LQ6ZRQ5 1243 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 TRPM4Q8TD43 1214 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 ASAP3Q8TDY4 903 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 FBXO32Q969P5 355 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 CNTN2Q02246 1040 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 MAPRE1Q15691 268 aaKnown RBP14.23□□□□□ -0.13
RFFL-201ENST00000315249 SYTL5Q8TDW5 730 aaPredicted RBP14.23□□□□□ -0.13
RFFL-201ENST00000315249 PPWD1Q96BP3 646 aaKnown RBP14.23□□□□□ -0.13
RFFL-201ENST00000315249 MID2Q9UJV3 735 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 RASGRF2O14827 1237 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 FKTNO75072 461 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 AP1G2O75843 785 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 ADCYAP1R1P41586 468 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 ART3Q13508 389 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 MFSD10Q14728 455 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 RNF10Q8N5U6 811 aaKnown RBP14.23□□□□□ -0.13
RFFL-201ENST00000315249 PPM1NQ8N819 430 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 C1orf54Q8WWF1 131 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 TTC17Q96AE7 1141 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 MTMR12Q9C0I1 747 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 BFARQ9NZS9 450 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 UBQLN1Q9UMX0 589 aaKnown RBP14.23□□□□□ -0.13
RFFL-201ENST00000315249 DIS3Q9Y2L1 958 aaKnown RBP14.23□□□□□ -0.13
RFFL-201ENST00000315249 NWD1Q149M9 1564 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 KIF1AQ12756 1690 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 INSRRP14616 1297 aa14.23□□□□□ -0.13
RFFL-201ENST00000315249 MAP4P27816 1152 aaKnown RBP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms