RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 RAPH1Q70E73 1250 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 ATL2Q8NHH9 583 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 TNFRSF25Q93038 417 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 SEMA4AQ9H3S1 761 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 SEMA6BQ9H3T3 888 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 TRAF3IP3Q9Y228 551 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 PFASO15067 1338 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 PI4K2BG5E9Z4 385 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 MSH4O15457 936 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 EYA4O95677 639 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 MAPK7Q13164 816 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 ATG4CQ96DT6 458 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 THTPAQ9BU02 230 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 SCINQ9Y6U3 715 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 UBR2Q8IWV8 1755 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 MYH14Q7Z406 1995 aaKnown RBP16.24■□□□□ 0.19
SHH-201ENST00000297261 P4HBP07237 508 aaKnown RBP16.24■□□□□ 0.19
SHH-201ENST00000297261 EEF1B2P24534 225 aaKnown RBP16.24■□□□□ 0.19
SHH-201ENST00000297261 CDK17Q00537 523 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 ITIH4Q14624 930 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 COG2Q14746 738 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 MSL3Q8N5Y2 521 aaKnown RBP16.24■□□□□ 0.19
SHH-201ENST00000297261 PRPF31Q8WWY3 499 aaKnown RBP16.24■□□□□ 0.19
SHH-201ENST00000297261 C18orf8Q96DM3 657 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 HIC2Q96JB3 615 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 NID2Q14112 1375 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 EPHA7Q15375 998 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 SMAD1Q15797 465 aaKnown RBP16.24■□□□□ 0.19
SHH-201ENST00000297261 CATSPER3Q86XQ3 398 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 CARD9Q9H257 536 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 NXF1Q9UBU9 619 aaKnown RBP16.24■□□□□ 0.19
SHH-201ENST00000297261 N4BP2Q86UW6 1770 aaPredicted RBP16.24■□□□□ 0.19
SHH-201ENST00000297261 MYH3P11055 1940 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 LRRC10BA6NIK2 292 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 RNF225M0QZC1 329 aaPredicted RBP16.24■□□□□ 0.19
SHH-201ENST00000297261 TRAPPC3O43617 180 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 APOEP02649 317 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 QARSP47897 775 aaKnown RBP16.24■□□□□ 0.19
SHH-201ENST00000297261 ARSEP51690 589 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 RCN1Q15293 331 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 RINT1Q6NUQ1 792 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 MIS18BP1Q6P0N0 1132 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 REEP2Q9BRK0 252 aa16.24■□□□□ 0.19
SHH-201ENST00000297261 B2RBV5 119 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 F8VZ95 297 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 PDXKO00764 312 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 GGPS1O95749 300 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 PSAPP07602 524 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 GSTA1P08263 222 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 FDX1P10109 184 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 VAMP7P51809 220 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 NUDCD3Q8IVD9 361 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 MKL1Q969V6 931 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 STK33Q9BYT3 514 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 ROPN1BQ9BZX4 212 aaPredicted RBP16.23■□□□□ 0.19
SHH-201ENST00000297261 ACAD9Q9H845 621 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 ROPN1Q9HAT0 212 aaPredicted RBP16.23■□□□□ 0.19
SHH-201ENST00000297261 KLHL11Q9NVR0 708 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 TJP1Q07157 1748 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 SYNJ2BP-COX16A0A087WUM0 186 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 ITIH2P19823 946 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 RPA1P27694 616 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 SERPINB3P29508 390 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 OVGP1Q12889 678 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 IL17AQ16552 155 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 ANO5Q75V66 913 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 TRIM50Q86XT4 487 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 SLC7A3Q8WY07 619 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 COX16Q9P0S2 106 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 CAPN9O14815 690 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 SSTR3P32745 418 aaPredicted RBP16.23■□□□□ 0.19
SHH-201ENST00000297261 SREBF1P36956 1147 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 PAPOLAP51003 745 aaKnown RBP16.23■□□□□ 0.19
SHH-201ENST00000297261 JAK3P52333 1124 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 IFI35P80217 286 aaPredicted RBP16.23■□□□□ 0.19
SHH-201ENST00000297261 AMPD2Q01433 879 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 MEI1Q5TIA1 1274 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 ICA1LQ8NDH6 482 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 PRCCQ92733 491 aaPredicted RBP16.23■□□□□ 0.19
SHH-201ENST00000297261 MTBPQ96DY7 904 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 SERPINI1Q99574 410 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 GSTA2P09210 222 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 OSBPP22059 807 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 PDCD2Q16342 344 aaPredicted RBP16.23■□□□□ 0.19
SHH-201ENST00000297261 OLFML2BQ68BL8 750 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 MCUQ8NE86 351 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 NRBP2Q9NSY0 501 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 KCNG1Q9UIX4 513 aa16.23■□□□□ 0.19
SHH-201ENST00000297261 MED24O75448 989 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 SNUPNO95149 360 aaKnown RBP16.22■□□□□ 0.19
SHH-201ENST00000297261 GARSP41250 739 aaKnown RBP16.22■□□□□ 0.19
SHH-201ENST00000297261 ITGA8P53708 1063 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 KRT76Q01546 638 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 KLHL38Q2WGJ6 581 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 CCDC125Q86Z20 511 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 FAF2Q96CS3 445 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 FAM81BQ96LP2 452 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 TSSK1BQ9BXA7 367 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 OSGEPQ9NPF4 335 aa16.22■□□□□ 0.19
SHH-201ENST00000297261 COL22A1Q8NFW1 1626 aaPredicted RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms