RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 KIFC1Q9BW19 673 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 ZC3H7BQ9UGR2 993 aaKnown RBP12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 TNFAIP8O95379 198 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 EPHB2P29323 1055 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 FBXW4P57775 412 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 METTL22Q9BUU2 404 aaPredicted RBP12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 CELF4Q9BZC1 486 aaKnown RBP12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 TUFMP49411 452 aaKnown RBP12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 CWF19L1Q69YN2 538 aaKnown RBP12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 SDR42E1Q8WUS8 393 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 MAGEB18Q96M61 343 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 TRIM45Q9H8W5 580 aaPredicted RBP12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 COPG2Q9UBF2 871 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 CORO1CQ9ULV4 474 aaPredicted RBP12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 NESP48681 1621 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 PAX3P23760 479 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 NLRX1Q86UT6 975 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 CNBD1Q8NA66 436 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 PCDHA4Q9UN74 947 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 XPAP23025 273 aaPredicted RBP12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 CSE1LP55060 971 aaKnown RBP12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 ZNF284Q2VY69 593 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 GALNT17Q6IS24 598 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 ABCB10Q9NRK6 738 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 CLIC5Q9NZA1 410 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 TOP2BQ02880 1626 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 CDH16O75309 829 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 FTLP02792 175 aaPredicted RBP12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 S100A6P06703 90 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 AKAP14Q86UN6 197 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 PNMA1Q8ND90 353 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 NOD1Q9Y239 953 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 ANKRD36BP1Q96IX9 119 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 GCOM2Q9BZD3 368 aaPredicted RBP12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 MTRF1O75570 445 aaKnown RBP12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 NME5P56597 212 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 ELOVL6Q9H5J4 265 aa12.32□□□□□ -0.44
SHROOM3-201ENST00000296043 FEN1P39748 380 aaKnown RBP12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 PCYOX1LQ8NBM8 494 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 EMILIN3Q9NT22 766 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 ZNF212Q9UDV6 495 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 PCSK1NQ9UHG2 260 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 SRPRBQ9Y5M8 271 aaKnown RBP12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 FSBPO95073 299 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 PLA2G4BP0C869 781 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 CSTF3Q12996 717 aaKnown RBP12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 TRMT5Q32P41 509 aaKnown RBP12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 COBLL1Q53SF7 1204 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 NECAB2Q7Z6G3 386 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 FMR1NBQ8N0W7 255 aaPredicted RBP12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 NFATC2IPQ8NCF5 419 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 RXFP1Q9HBX9 757 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 COL17A1Q9UMD9 1497 aaPredicted RBP12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 TBC1D12O60347 775 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 FKBP9O95302 570 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 RFC4P35249 363 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 KRT20P35900 424 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 ELF3P78545 371 aaPredicted RBP12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 ARHGEF16Q5VV41 709 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 CENPPQ6IPU0 288 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 ZBTB49Q6ZSB9 765 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 FKBP9P1Q75LS8 142 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 CHP1Q99653 195 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 DMAP1Q9NPF5 467 aaPredicted RBP12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 ADGRA2Q96PE1 1338 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 A0A1W2PRG6 482 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 FOSP01100 380 aaPredicted RBP12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 ARF5P84085 180 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 BNC2Q6ZN30 1099 aaPredicted RBP12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 NLRP4Q96MN2 994 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 PHTF1Q9UMS5 762 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 CITO14578 2027 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 CFAP74Q9C0B2 1584 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 TFE3P19532 575 aaPredicted RBP12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 ZNF57Q68EA5 555 aaPredicted RBP12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 EGFL6Q8IUX8 553 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 APOL4Q9BPW4 351 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 MYL1P05976 194 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 FGFR3P22607 806 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 SCNN1BP51168 640 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 BCAP31P51572 246 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 MIER2Q8N344 545 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 LRRN4CLQ8ND94 238 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 FBXO9Q9UK97 447 aaPredicted RBP12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 SPDYE5A6NIY4 337 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 SPDYE7PQ495Y7 208 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 EPS8L2Q9H6S3 715 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 NR3C1P04150 777 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 DGKKQ5KSL6 1271 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 OLFM1Q99784 485 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 SENP7Q9BQF6 1050 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 PAGR1Q9BTK6 254 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 C1orf50Q9BV19 199 aa12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 PUS7LQ9H0K6 701 aaKnown RBP12.31□□□□□ -0.44
SHROOM3-201ENST00000296043 IL6P05231 212 aa12.3□□□□□ -0.44
SHROOM3-201ENST00000296043 QARSP47897 775 aaKnown RBP12.3□□□□□ -0.44
SHROOM3-201ENST00000296043 GIPC3Q8TF64 312 aa12.3□□□□□ -0.44
SHROOM3-201ENST00000296043 TFR2Q9UP52 801 aa12.3□□□□□ -0.44
SHROOM3-201ENST00000296043 KLRF2D3W0D1 207 aa12.3□□□□□ -0.44
SHROOM3-201ENST00000296043 UFL1O94874 794 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms