RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 TTI2Q6NXR4 508 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 TRPM8Q7Z2W7 1104 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 CATSPER3Q86XQ3 398 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 OR6P1Q8NGX9 317 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 CDC26Q8NHZ8 85 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 CYFIP2Q96F07 1278 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 IFT43Q96FT9 208 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 OSBPL1AQ9BXW6 950 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 CELF4Q9BZC1 486 aaKnown RBP11.33□□□□□ -0.6
CD44-201ENST00000263398 FAM129AQ9BZQ8 928 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 ALG13Q9NP73 1137 aaKnown RBP11.33□□□□□ -0.6
CD44-201ENST00000263398 RAB6BQ9NRW1 208 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 KLHL11Q9NVR0 708 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 GTF3C4Q9UKN8 822 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 TFR2Q9UP52 801 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 PIK3R2O00459 728 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 MAFGO15525 162 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 KCNN4O15554 427 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 CYP11B2P19099 503 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 KCNJ1P48048 391 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 CDK17Q00537 523 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 ZBTB17Q13105 803 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 FBXW10Q5XX13 1052 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 ZNF710Q8N1W2 664 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 SPDYE1Q8NFV5 336 aaPredicted RBP11.33□□□□□ -0.6
CD44-201ENST00000263398 ABTB1Q969K4 478 aaPredicted RBP11.33□□□□□ -0.6
CD44-201ENST00000263398 ARHGEF26Q96DR7 871 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 STAMBPL1Q96FJ0 436 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 PNKPQ96T60 521 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 MXRA8Q9BRK3 442 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 TSSK1BQ9BXA7 367 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 MAD2L2Q9UI95 211 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 TMEM120BA0PK00 339 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 SPAG6O75602 509 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 PLEKP08567 350 aaPredicted RBP11.33□□□□□ -0.6
CD44-201ENST00000263398 MYL3P08590 195 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 PLA2G4AP47712 749 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 SESN2P58004 480 aaPredicted RBP11.33□□□□□ -0.6
CD44-201ENST00000263398 HIC1Q14526 733 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 ZNF677Q86XU0 584 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 RIBC1Q8N443 379 aaPredicted RBP11.33□□□□□ -0.6
CD44-201ENST00000263398 TMEM143Q96AN5 459 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 TRIM62Q9BVG3 475 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 ING2Q9H160 280 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 GOLPH3Q9H4A6 298 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 WDR70Q9NW82 654 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 ZC3H7BQ9UGR2 993 aaKnown RBP11.33□□□□□ -0.6
CD44-201ENST00000263398 GGT7Q9UJ14 662 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 SLC8A2Q9UPR5 921 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 HLA-DRAP01903 254 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 ARHGDIAP52565 204 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 RBP5P82980 135 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 NME3Q13232 169 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 MAPRE2Q15555 327 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 CAPRIN2Q6IMN6 1127 aaKnown RBP11.33□□□□□ -0.6
CD44-201ENST00000263398 FRA10AC1Q70Z53 315 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 C4orf33Q8N1A6 199 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 ICA1LQ8NDH6 482 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 TPCN2Q8NHX9 752 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 SEPT1Q8WYJ6 367 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 AGAP1Q9UPQ3 857 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 MYOM1P52179 1685 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 ASB14A6NK59 587 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 F5H423 210 aaPredicted RBP11.32□□□□□ -0.6
CD44-201ENST00000263398 UBE2Q2LH0YL09 131 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 E2F6O75461 281 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 MAGEA4P43358 317 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 GRB10Q13322 594 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 SLC29A2Q14542 456 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 FASTKD1Q53R41 847 aaKnown RBP11.32□□□□□ -0.6
CD44-201ENST00000263398 CDKAL1Q5VV42 579 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 PAPD7Q5XG87 772 aaKnown RBP11.32□□□□□ -0.6
CD44-201ENST00000263398 RASSF3Q86WH2 238 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 RAPGEF5Q92565 580 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 AFF2P51816 1311 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 SERPINB9P50453 376 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 CENPCQ03188 943 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 PTGISQ16647 500 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 TMEM259Q4ZIN3 620 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 ARHGAP18Q8N392 663 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 PARD3BQ8TEW8 1205 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 YY1AP1Q9H869 796 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 ANKEF1Q9NU02 776 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 USP32Q8NFA0 1604 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 BNIP3LO60238 219 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 MCF2P10911 925 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 FNTAP49354 379 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 HSD17B4P51659 736 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 NTRK3Q16288 839 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 RARS2Q5T160 578 aaKnown RBP11.32□□□□□ -0.6
CD44-201ENST00000263398 FAM151AQ8WW52 585 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 NCLNQ969V3 563 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 ERP27Q96DN0 273 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 OLFM3Q96PB7 478 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 MCEEQ96PE7 176 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 MMP19Q99542 508 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 EPAS1Q99814 870 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 SIK2Q9H0K1 926 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 AGPAT3Q9NRZ7 376 aa11.32□□□□□ -0.6
CD44-201ENST00000263398 AP3B1O00203 1094 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms