RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 CCDC197Q8NCU1 140 aa17.51■□□□□ 0.39
HOXD3-201ENST00000249440 NSUN6Q8TEA1 469 aaKnown RBP17.51■□□□□ 0.39
HOXD3-201ENST00000249440 ZNF516Q92618 1163 aa17.51■□□□□ 0.39
HOXD3-201ENST00000249440 JPH1Q9HDC5 661 aaPredicted RBP17.51■□□□□ 0.39
HOXD3-201ENST00000249440 XPNPEP1Q9NQW7 623 aa17.51■□□□□ 0.39
HOXD3-201ENST00000249440 CHST7Q9NS84 486 aa17.51■□□□□ 0.39
HOXD3-201ENST00000249440 CENPCQ03188 943 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 PTK6Q13882 451 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 LACTB2Q53H82 288 aaPredicted RBP17.5■□□□□ 0.39
HOXD3-201ENST00000249440 CIAPIN1Q6FI81 312 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 CDHR1Q96JP9 859 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 PRMT1Q99873 361 aaKnown RBP17.5■□□□□ 0.39
HOXD3-201ENST00000249440 CCDC113Q9H0I3 377 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 KDM4CQ9H3R0 1056 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 HOMER3Q9NSC5 361 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 DOCK5Q9H7D0 1870 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 TP73O15350 636 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 CALCAP01258 141 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 CYP1A1P04798 512 aaPredicted RBP17.5■□□□□ 0.39
HOXD3-201ENST00000249440 MNAT1P51948 309 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 CAV1Q03135 178 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 PSMD6Q15008 389 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 ZACNQ401N2 412 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 TAS1R3Q7RTX0 852 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 ATL2Q8NHH9 583 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 CCT6BQ92526 530 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 SLC9A2Q9UBY0 812 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 NFASCO94856 1347 aa17.5■□□□□ 0.39
HOXD3-201ENST00000249440 DNM1LO00429 736 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 ATP5DP30049 168 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 GTF2A1P52655 376 aaPredicted RBP17.49■□□□□ 0.39
HOXD3-201ENST00000249440 PRKCEQ02156 737 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 PTP4A2Q12974 167 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 RHBDF2Q6PJF5 856 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.49■□□□□ 0.39
HOXD3-201ENST00000249440 WNK4Q96J92 1243 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 SERPINB12Q96P63 405 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 TRIM7Q9C029 511 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 POLR3FQ9H1D9 316 aaPredicted RBP17.49■□□□□ 0.39
HOXD3-201ENST00000249440 AAASQ9NRG9 546 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 COL11A1P12107 1806 aaPredicted RBP17.49■□□□□ 0.39
HOXD3-201ENST00000249440 RASSF9O75901 435 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 PROSCO94903 275 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 ACSL3O95573 720 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 POTEJP0CG39 1038 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 GHRP10912 638 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 STRN3Q13033 797 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 LIN9Q5TKA1 542 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 SNRNP48Q6IEG0 339 aaKnown RBP17.49■□□□□ 0.39
HOXD3-201ENST00000249440 PIGWQ7Z7B1 504 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 EXOC3L1Q86VI1 746 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 TAX1BP1Q86VP1 789 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 CCDC60Q8IWA6 550 aaPredicted RBP17.49■□□□□ 0.39
HOXD3-201ENST00000249440 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.49■□□□□ 0.39
HOXD3-201ENST00000249440 ATG4AQ8WYN0 398 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 DDX27Q96GQ7 796 aaKnown RBP17.49■□□□□ 0.39
HOXD3-201ENST00000249440 TRAIPQ9BWF2 469 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 DCLK3Q9C098 648 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 MRPL47Q9HD33 250 aaKnown RBP17.49■□□□□ 0.39
HOXD3-201ENST00000249440 SAMD15Q9P1V8 674 aa17.49■□□□□ 0.39
HOXD3-201ENST00000249440 RGS20O76081 388 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 HLA-DRAP01903 254 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 C4BPAP04003 597 aaKnown RBP17.48■□□□□ 0.39
HOXD3-201ENST00000249440 IVDP26440 423 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 PIK3CAP42336 1068 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 OAZ1P54368 228 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 BACE1P56817 501 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 ACTR2P61160 394 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 SP4Q02446 784 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 ITIH4Q14624 930 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 LONRF1Q17RB8 773 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 LMBRD2Q68DH5 695 aaPredicted RBP17.48■□□□□ 0.39
HOXD3-201ENST00000249440 TRIM72Q6ZMU5 477 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 MON1BQ7L1V2 547 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 CCDC50Q8IVM0 306 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 DDX23Q9BUQ8 820 aaKnown RBP17.48■□□□□ 0.39
HOXD3-201ENST00000249440 NSRP1Q9H0G5 558 aaKnown RBP17.48■□□□□ 0.39
HOXD3-201ENST00000249440 KLC4Q9NSK0 619 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 AGO2Q9UKV8 859 aaKnown RBP17.48■□□□□ 0.39
HOXD3-201ENST00000249440 PSTPIP1O43586 416 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 TTC4O95801 387 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 ATF2P15336 505 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 SCTRP47872 440 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 ITGA8P53708 1063 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 MKRN4PQ13434 485 aaPredicted RBP17.48■□□□□ 0.39
HOXD3-201ENST00000249440 XKR3Q5GH77 459 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 MIS18BP1Q6P0N0 1132 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 ABHD15Q6UXT9 468 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 PHLDB2Q86SQ0 1253 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 RHOT1Q8IXI2 618 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 LRRC34Q8IZ02 419 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 VCPIP1Q96JH7 1222 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 SCLT1Q96NL6 688 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 STYXL1Q9Y6J8 313 aa17.48■□□□□ 0.39
HOXD3-201ENST00000249440 STAM2O75886 525 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 VIMP08670 466 aaKnown RBP17.47■□□□□ 0.39
HOXD3-201ENST00000249440 CHKAP35790 457 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 ADCY8P40145 1251 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 CNGA2Q16280 664 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 GNPTABQ3T906 1256 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms