RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 UTRNP46939 3433 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 G3V3G9 751 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 CDH16O75309 829 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 ZSCAN5DPP0CG00 497 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 T-ENOLP0DO92 83 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 KRT5P13647 590 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 PLS3P13797 630 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 TAS2R40P59535 323 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 KLF1Q13351 362 aaPredicted RBP13.2□□□□□ -0.3
NUP88-201ENST00000225696 DCAF8Q5TAQ9 597 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 PARD3BQ8TEW8 1205 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 FBXO41Q8TF61 875 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 CNKSR1Q969H4 720 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 IFT74Q96LB3 600 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 FHDC1Q9C0D6 1143 aaPredicted RBP13.2□□□□□ -0.3
NUP88-201ENST00000225696 KIAA1683Q9H0B3 1180 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 KCNH7Q9NS40 1196 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 NKIRAS1Q9NYS0 192 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 COL20A1Q9P218 1284 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 LRRC37AA6NMS7 1700 aa13.19□□□□□ -0.3
NUP88-201ENST00000225696 DHX15O43143 795 aaKnown RBP13.19□□□□□ -0.3
NUP88-201ENST00000225696 SORBS3O60504 671 aa13.19□□□□□ -0.3
NUP88-201ENST00000225696 SMNDC1O75940 238 aaKnown RBP eCLIP13.19□□□□□ -0.3
NUP88-201ENST00000225696 ASMTLO95671 621 aa13.19□□□□□ -0.3
NUP88-201ENST00000225696 UNGP13051 313 aaPredicted RBP13.19□□□□□ -0.3
NUP88-201ENST00000225696 ETS1P14921 441 aa13.19□□□□□ -0.3
NUP88-201ENST00000225696 ATP5DP30049 168 aa13.19□□□□□ -0.3
NUP88-201ENST00000225696 GJC1P36383 396 aa13.19□□□□□ -0.3
NUP88-201ENST00000225696 GTF2BQ00403 316 aa13.19□□□□□ -0.3
NUP88-201ENST00000225696 ATP13A4Q4VNC1 1196 aa13.19□□□□□ -0.3
NUP88-201ENST00000225696 IZUMO3Q5VZ72 239 aa13.19□□□□□ -0.3
NUP88-201ENST00000225696 ARHGEF18Q6ZSZ5 1173 aa13.19□□□□□ -0.3
NUP88-201ENST00000225696 MIER3Q7Z3K6 550 aa13.19□□□□□ -0.3
NUP88-201ENST00000225696 C12orf56Q8IXR9 622 aa13.19□□□□□ -0.3
NUP88-201ENST00000225696 MCOLN2Q8IZK6 566 aa13.19□□□□□ -0.3
NUP88-201ENST00000225696 C4orf33Q8N1A6 199 aa13.19□□□□□ -0.3
NUP88-201ENST00000225696 ATL2Q8NHH9 583 aa13.19□□□□□ -0.3
NUP88-201ENST00000225696 RBM15Q96T37 977 aaKnown RBP eCLIP13.19□□□□□ -0.37e-12■■□□□ 12.2
NUP88-201ENST00000225696 ATRNL1Q5VV63 1379 aa13.19□□□□□ -0.3
NUP88-201ENST00000225696 CBX6O95503 412 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 TCF4P15884 667 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 CD58P19256 250 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 LACTBP83111 547 aaPredicted RBP13.18□□□□□ -0.3
NUP88-201ENST00000225696 PKN2Q16513 984 aaKnown RBP13.18□□□□□ -0.3
NUP88-201ENST00000225696 PLA2G4FQ68DD2 849 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 KRT39Q6A163 491 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 MIS18BP1Q6P0N0 1132 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 MICAL1Q8TDZ2 1067 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 DENND1AQ8TEH3 1009 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 PHTF1Q9UMS5 762 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 FAM47DPA6NHR8 397 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 BANF1O75531 89 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 GAS8O95995 478 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 GNAZP19086 355 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 RPA3P35244 121 aaPredicted RBP13.18□□□□□ -0.3
NUP88-201ENST00000225696 MAGEA4P43358 317 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 ATP11AP98196 1134 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 STRN3Q13033 797 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 ACVR2BQ13705 512 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 MOGSQ13724 837 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 P3H1Q32P28 736 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 LMBRD2Q68DH5 695 aaPredicted RBP13.18□□□□□ -0.3
NUP88-201ENST00000225696 TRIM68Q6AZZ1 485 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 SLC39A4Q6P5W5 647 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 ZNF449Q6P9G9 518 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 SV2AQ7L0J3 742 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 TRABD2AQ86V40 505 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 FAM13CQ8NE31 585 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 SLC7A6OSQ96CW6 309 aaPredicted RBP13.18□□□□□ -0.3
NUP88-201ENST00000225696 KIAA1586Q9HCI6 787 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 RAB20Q9NX57 234 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.18□□□□□ -0.3
NUP88-201ENST00000225696 USP20Q9Y2K6 914 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 UMODL1Q5DID0 1318 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 MYPNQ86TC9 1320 aa13.18□□□□□ -0.3
NUP88-201ENST00000225696 SCN9AQ15858 1988 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 A0A1W2PPM1 405 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 GSTTP1A0A1W2PQM5 241 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 POC1B-GALNT4F8VUJ3 575 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 PI4K2BG5E9Z4 385 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 PEX11AO75192 247 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 KRT10P13645 584 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 KLRC2P26717 231 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 EPHB2P29323 1055 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 PEX19P40855 299 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 GPC3P51654 580 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 POLGP54098 1239 aaPredicted RBP13.17□□□□□ -0.3
NUP88-201ENST00000225696 MKRN3Q13064 507 aaKnown RBP13.17□□□□□ -0.3
NUP88-201ENST00000225696 SLC1A5Q15758 541 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 VSIG1Q86XK7 387 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 PASD1Q8IV76 773 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 TTC8Q8TAM2 541 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 AGBL1Q96MI9 1066 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 CSRNP1Q96S65 589 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 MXRA8Q9BRK3 442 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 GLIS2Q9BZE0 524 aaPredicted RBP13.17□□□□□ -0.3
NUP88-201ENST00000225696 C12orf65Q9H3J6 166 aaKnown RBP13.17□□□□□ -0.3
NUP88-201ENST00000225696 SAYSD1Q9NPB0 183 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 NRXN2Q9P2S2 1712 aa13.17□□□□□ -0.3
NUP88-201ENST00000225696 LY75O60449 1722 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms