RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeastyeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
WHI3YNL197C RSM10Q03201 203 aa2.45□□□□□ -2.02
WHI3YNL197C YLR179CQ06252 201 aaKnown RBP2.45□□□□□ -2.02
WHI3YNL197C GEP5Q12393 293 aa2.45□□□□□ -2.02
WHI3YNL197C YCL012CQ8J0M4 134 aa2.45□□□□□ -2.02
WHI3YNL197C CHD1P32657 1468 aa2.44□□□□□ -2.02
WHI3YNL197C YEL009C-AA0A023PZF2 135 aa2.44□□□□□ -2.02
WHI3YNL197C PEX17P40155 199 aa2.44□□□□□ -2.02
WHI3YNL197C YMR144WP40214 342 aaKnown RBP2.44□□□□□ -2.02
WHI3YNL197C SYF2P53277 215 aaPredicted RBP2.44□□□□□ -2.02
WHI3YNL197C SSQ1Q05931 657 aaPredicted RBP2.44□□□□□ -2.02
WHI3YNL197C YPR172WQ06608 200 aa2.44□□□□□ -2.02
WHI3YNL197C YOR268CQ08734 132 aa2.44□□□□□ -2.02
WHI3YNL197C RNP1P32385 249 aa2.43□□□□□ -2.02
WHI3YNL197C YER189WP40104 122 aa2.43□□□□□ -2.02
WHI3YNL197C ADO1P47143 340 aaKnown RBP2.43□□□□□ -2.02
WHI3YNL197C CGR1P53188 120 aa2.43□□□□□ -2.02
WHI3YNL197C YLR030WQ07967 263 aa2.43□□□□□ -2.02
WHI3YNL197C RAD10P06838 210 aa2.43□□□□□ -2.02
WHI3YNL197C PIR5P46999 287 aa2.43□□□□□ -2.02
WHI3YNL197C YGL159WP53110 370 aa2.43□□□□□ -2.02
WHI3YNL197C CAB4P53332 305 aa2.43□□□□□ -2.02
WHI3YNL197C GET4Q12125 312 aa2.43□□□□□ -2.02
WHI3YNL197C YLR462WO13556 202 aa2.42□□□□□ -2.02
WHI3YNL197C MET2P08465 486 aa2.42□□□□□ -2.02
WHI3YNL197C RFA3P26755 122 aaKnown RBP2.42□□□□□ -2.02
WHI3YNL197C MGM101P32787 269 aaKnown RBP2.42□□□□□ -2.02
WHI3YNL197C SSO1P32867 290 aa2.42□□□□□ -2.02
WHI3YNL197C MSA2P36157 363 aa2.42□□□□□ -2.02
WHI3YNL197C YEL075CP39972 122 aa2.42□□□□□ -2.02
WHI3YNL197C RPA43P46669 326 aa2.42□□□□□ -2.02
WHI3YNL197C YPR195CQ06594 109 aa2.42□□□□□ -2.02
WHI3YNL197C FEX1Q08913 375 aa2.42□□□□□ -2.02
WHI3YNL197C FEX2Q08991 375 aa2.42□□□□□ -2.02
WHI3YNL197C MRX4Q12467 430 aa2.42□□□□□ -2.02
WHI3YNL197C URA6P15700 204 aa2.41□□□□□ -2.02
WHI3YNL197C FMT1P32785 401 aa2.41□□□□□ -2.02
WHI3YNL197C SSH1P38353 490 aaKnown RBP2.41□□□□□ -2.02
WHI3YNL197C NUP57P48837 541 aa2.41□□□□□ -2.02
WHI3YNL197C BRR6P53062 197 aa2.41□□□□□ -2.02
WHI3YNL197C FAR8Q05040 523 aa2.41□□□□□ -2.02
WHI3YNL197C PST1Q12355 444 aa2.41□□□□□ -2.02
WHI3YNL197C JLP1Q12358 412 aa2.41□□□□□ -2.02
WHI3YNL197C TUS1Q06412 1307 aa2.41□□□□□ -2.02
WHI3YNL197C YPK2P18961 677 aa2.41□□□□□ -2.02
WHI3YNL197C APA2P22108 325 aa2.41□□□□□ -2.02
WHI3YNL197C IKI1P38874 309 aa2.41□□□□□ -2.02
WHI3YNL197C SPO73P40031 143 aa2.41□□□□□ -2.02
WHI3YNL197C RFC4P40339 323 aaKnown RBP2.41□□□□□ -2.02
WHI3YNL197C SNZ1Q03148 297 aa2.41□□□□□ -2.02
WHI3YNL197C SLD7Q08457 257 aa2.41□□□□□ -2.02
WHI3YNL197C RPL28P02406 149 aaKnown RBP2.4□□□□□ -2.02
WHI3YNL197C CAT5P41735 233 aa2.4□□□□□ -2.02
WHI3YNL197C ERV29P53337 310 aa2.4□□□□□ -2.02
WHI3YNL197C HEM25Q07534 307 aa2.4□□□□□ -2.02
WHI3YNL197C COX5AP00424 153 aa2.4□□□□□ -2.03
WHI3YNL197C MATALPHA2P0CY08 210 aa2.4□□□□□ -2.03
WHI3YNL197C HMLALPHA2P0CY09 210 aa2.4□□□□□ -2.03
WHI3YNL197C GON7P46984 123 aa2.4□□□□□ -2.03
WHI3YNL197C FYV6P53913 173 aa2.4□□□□□ -2.03
WHI3YNL197C CDC28P00546 298 aaKnown RBP2.39□□□□□ -2.03
WHI3YNL197C HTB1P02293 131 aaKnown RBP2.39□□□□□ -2.03
WHI3YNL197C HTB2P02294 131 aa2.39□□□□□ -2.03
WHI3YNL197C KRE1P17260 313 aa2.39□□□□□ -2.03
WHI3YNL197C DBF2P22204 572 aa2.39□□□□□ -2.03
WHI3YNL197C ERG24P32462 438 aaKnown RBP2.39□□□□□ -2.03
WHI3YNL197C RCN1P36054 211 aa2.39□□□□□ -2.03
WHI3YNL197C SMD3P43321 101 aaKnown RBP2.39□□□□□ -2.03
WHI3YNL197C IRC18P47056 224 aa2.39□□□□□ -2.03
WHI3YNL197C NOP19P53317 196 aaPredicted RBP2.39□□□□□ -2.03
WHI3YNL197C INM2Q05533 292 aa2.39□□□□□ -2.03
WHI3YNL197C ABP140Q08641 628 aaKnown RBP2.39□□□□□ -2.03
WHI3YNL197C NIP7Q08962 181 aaKnown RBP2.39□□□□□ -2.03
WHI3YNL197C SDH4P37298 181 aa2.38□□□□□ -2.03
WHI3YNL197C CTR2P38865 189 aa2.38□□□□□ -2.03
WHI3YNL197C BUD13P46947 266 aaPredicted RBP2.38□□□□□ -2.03
WHI3YNL197C GTR2P53290 341 aa2.38□□□□□ -2.03
WHI3YNL197C YMR226CQ05016 267 aaKnown RBP2.38□□□□□ -2.03
WHI3YNL197C ATG38Q05789 226 aaKnown RBP2.38□□□□□ -2.03
WHI3YNL197C YRA1Q12159 226 aaKnown RBP2.38□□□□□ -2.03
WHI3YNL197C IPP1P00817 287 aaKnown RBP2.38□□□□□ -2.03
WHI3YNL197C DPM1P14020 267 aaKnown RBP2.38□□□□□ -2.03
WHI3YNL197C CBF1P17106 351 aa2.38□□□□□ -2.03
WHI3YNL197C ADE1P27616 306 aa2.38□□□□□ -2.03
WHI3YNL197C IDH1P28834 360 aaKnown RBP RIP-Chip data2.38□□□□□ -2.03not detected
WHI3YNL197C OAC1P32332 324 aa2.38□□□□□ -2.03
WHI3YNL197C ASF2P32448 525 aaPredicted RBP2.38□□□□□ -2.03
WHI3YNL197C YPT52P36018 234 aaKnown RBP2.38□□□□□ -2.03
WHI3YNL197C RPF1P38805 295 aaKnown RBP2.38□□□□□ -2.03
WHI3YNL197C GRH1Q04410 372 aaKnown RBP2.38□□□□□ -2.03
WHI3YNL197C BBP1Q12365 385 aa2.38□□□□□ -2.03
WHI3YNL197C PRM7Q12459 698 aa2.38□□□□□ -2.03
WHI3YNL197C DSF1P0CX08 502 aa2.37□□□□□ -2.03
WHI3YNL197C YNR073CP0CX09 502 aa2.37□□□□□ -2.03
WHI3YNL197C OST2P46964 130 aa2.37□□□□□ -2.03
WHI3YNL197C BXI1P48558 297 aa2.37□□□□□ -2.03
WHI3YNL197C DID2P69771 204 aa2.37□□□□□ -2.03
WHI3YNL197C TLG1Q03322 224 aa2.37□□□□□ -2.03
WHI3YNL197C HTL1Q9URQ5 78 aa2.37□□□□□ -2.03
WHI3YNL197C QCR7P00128 127 aa2.36□□□□□ -2.03
WHI3YNL197C YCR087C-AP37263 153 aa2.36□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms