RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 PPP1R13LQ8WUF5 828 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.76■□□□□ 0.755e-8■■■■■ 65.3
CLN3-263ENST00000637871 CEP89Q96ST8 783 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 AMFRQ9UKV5 643 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 GOLGA8IPA6NC78 632 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 GOLGA8JA6NMD2 632 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 RTN2O75298 545 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 SGPL1O95470 568 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 FTCDO95954 541 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 ZNF286BP0CG31 522 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 BPIFB4P59827 614 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 LAMC2Q13753 1193 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 PPP2R5EQ16537 467 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 GNASQ5JWF2 1037 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 ZPBP2Q6X784 338 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 TRIM50Q86XT4 487 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 EIF1ADQ8N9N8 165 aaKnown RBP19.76■□□□□ 0.75
CLN3-263ENST00000637871 PSPC1Q8WXF1 523 aaKnown RBP19.76■□□□□ 0.75
CLN3-263ENST00000637871 EMID1Q96A84 441 aaPredicted RBP19.76■□□□□ 0.75
CLN3-263ENST00000637871 GPR20Q99678 358 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 TMEM106CQ9BVX2 250 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 MYH9P35579 1960 aaKnown RBP19.75■□□□□ 0.75
CLN3-263ENST00000637871 ADGRA3Q8IWK6 1321 aa19.75■□□□□ 0.75
CLN3-263ENST00000637871 NOP56O00567 594 aaKnown RBP19.75■□□□□ 0.75
CLN3-263ENST00000637871 NCK2O43639 380 aa19.75■□□□□ 0.75
CLN3-263ENST00000637871 GLRA2P23416 452 aa19.75■□□□□ 0.75
CLN3-263ENST00000637871 GJA8P48165 433 aa19.75■□□□□ 0.75
CLN3-263ENST00000637871 SOX10P56693 466 aa19.75■□□□□ 0.75
CLN3-263ENST00000637871 C2orf54Q08AI8 447 aa19.75■□□□□ 0.75
CLN3-263ENST00000637871 MXD4Q14582 209 aaPredicted RBP19.75■□□□□ 0.75
CLN3-263ENST00000637871 SMC1AQ14683 1233 aaKnown RBP19.75■□□□□ 0.75
CLN3-263ENST00000637871 TAS1R3Q7RTX0 852 aa19.75■□□□□ 0.75
CLN3-263ENST00000637871 ARHGEF19Q8IW93 802 aa19.75■□□□□ 0.75
CLN3-263ENST00000637871 PPTC7Q8NI37 304 aa19.75■□□□□ 0.75
CLN3-263ENST00000637871 OLIG1Q8TAK6 271 aa19.75■□□□□ 0.75
CLN3-263ENST00000637871 DIS3LQ8TF46 1054 aaKnown RBP19.75■□□□□ 0.75
CLN3-263ENST00000637871 SAAL1Q96ER3 474 aa19.75■□□□□ 0.75
CLN3-263ENST00000637871 FNBP1Q96RU3 617 aa19.75■□□□□ 0.75
CLN3-263ENST00000637871 KIFC3Q9BVG8 833 aa19.75■□□□□ 0.75
CLN3-263ENST00000637871 CRISPLD2Q9H0B8 497 aa19.75■□□□□ 0.75
CLN3-263ENST00000637871 AGO2Q9UKV8 859 aaKnown RBP19.75■□□□□ 0.75
CLN3-263ENST00000637871 OGDHLQ9ULD0 1010 aa19.75■□□□□ 0.75
CLN3-263ENST00000637871 TTC7AQ9ULT0 858 aaPredicted RBP19.75■□□□□ 0.75
CLN3-263ENST00000637871 STXBP5LQ9Y2K9 1186 aa19.75■□□□□ 0.75
CLN3-263ENST00000637871 CCDC188H7C350 402 aa19.74■□□□□ 0.75
CLN3-263ENST00000637871 MYL3P08590 195 aa19.74■□□□□ 0.75
CLN3-263ENST00000637871 EN2P19622 333 aaPredicted RBP19.74■□□□□ 0.75
CLN3-263ENST00000637871 KCNA10Q16322 511 aa19.74■□□□□ 0.75
CLN3-263ENST00000637871 PPP1R2P3Q6NXS1 205 aa19.74■□□□□ 0.75
CLN3-263ENST00000637871 C15orf39Q6ZRI6 1047 aa19.74■□□□□ 0.75
CLN3-263ENST00000637871 SV2AQ7L0J3 742 aa19.74■□□□□ 0.75
CLN3-263ENST00000637871 ZNF677Q86XU0 584 aa19.74■□□□□ 0.75
CLN3-263ENST00000637871 PPM1KQ8N3J5 372 aa19.74■□□□□ 0.75
CLN3-263ENST00000637871 KLHDC9Q8NEP7 349 aa19.74■□□□□ 0.75
CLN3-263ENST00000637871 CCDC127Q96BQ5 260 aa19.74■□□□□ 0.75
CLN3-263ENST00000637871 C2orf40Q9H1Z8 148 aa19.74■□□□□ 0.75
CLN3-263ENST00000637871 SPC25Q9HBM1 224 aa19.74■□□□□ 0.75
CLN3-263ENST00000637871 Q9Y3F1 56 aa19.74■□□□□ 0.75
CLN3-263ENST00000637871 A6NJR5 290 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 CCDC85CA6NKD9 419 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 SASH3O75995 380 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 TCF7P36402 384 aaPredicted RBP19.73■□□□□ 0.75
CLN3-263ENST00000637871 MNX1P50219 401 aaPredicted RBP19.73■□□□□ 0.75
CLN3-263ENST00000637871 GPC5P78333 572 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 CASP8Q14790 479 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 SURF1Q15526 300 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 WDR44Q5JSH3 913 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 C8orf74Q6P047 294 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 RNF180Q86T96 592 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 IFT20Q8IY31 132 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 USP38Q8NB14 1042 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 SLC35G2Q8TBE7 412 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 HELQQ8TDG4 1101 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 PCYT2Q99447 389 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 NAP1L3Q99457 506 aaPredicted RBP19.73■□□□□ 0.75
CLN3-263ENST00000637871 STIM2Q9P246 746 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 MIF4GDA9UHW6 222 aaKnown RBP19.73■□□□□ 0.75
CLN3-263ENST00000637871 MTA2O94776 668 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 CXCR5P32302 372 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 CPT1AP50416 773 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 PRPF4BQ13523 1007 aaKnown RBP19.73■□□□□ 0.75
CLN3-263ENST00000637871 CCSAPQ6IQ19 270 aaPredicted RBP19.73■□□□□ 0.75
CLN3-263ENST00000637871 CXCL17Q6UXB2 119 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 DAAM2Q86T65 1068 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 NT5DC3Q86UY8 548 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 RASGEF1CQ8N431 466 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 HES6Q96HZ4 224 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 FAM213AQ9BRX8 229 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 MED4Q9NPJ6 270 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 TMEM59LQ9UK28 342 aa19.73■□□□□ 0.75
CLN3-263ENST00000637871 A0A0U1RQG5 324 aaPredicted RBP19.72■□□□□ 0.75
CLN3-263ENST00000637871 LRRIQ4A6NIV6 560 aa19.72■□□□□ 0.75
CLN3-263ENST00000637871 KCNK3O14649 394 aa19.72■□□□□ 0.75
CLN3-263ENST00000637871 ASAP2O43150 1006 aa19.72■□□□□ 0.75
CLN3-263ENST00000637871 LRRN2O75325 713 aa19.72■□□□□ 0.75
CLN3-263ENST00000637871 ASGR1P07306 291 aa19.72■□□□□ 0.75
CLN3-263ENST00000637871 NNTQ13423 1086 aa19.72■□□□□ 0.75
CLN3-263ENST00000637871 C11orf63Q6NUN7 778 aa19.72■□□□□ 0.75
CLN3-263ENST00000637871 EMBQ6PCB8 327 aa19.72■□□□□ 0.75
CLN3-263ENST00000637871 RPUSD2Q8IZ73 545 aaKnown RBP19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms