RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 TRAIPQ9BWF2 469 aa7.08□□□□□ -1.28
TCF4-249ENST00000625716 TRIM6Q9C030 488 aaPredicted RBP7.08□□□□□ -1.28
TCF4-249ENST00000625716 PHACTR1Q9C0D0 580 aa7.08□□□□□ -1.28
TCF4-249ENST00000625716 POLR3FQ9H1D9 316 aaPredicted RBP7.08□□□□□ -1.28
TCF4-249ENST00000625716 IGFLR1Q9H665 355 aa7.08□□□□□ -1.28
TCF4-249ENST00000625716 FAM105AQ9NUU6 356 aa7.08□□□□□ -1.28
TCF4-249ENST00000625716 PLAGL2Q9UPG8 496 aa7.08□□□□□ -1.28
TCF4-249ENST00000625716 DNM3Q9UQ16 869 aa7.08□□□□□ -1.28
TCF4-249ENST00000625716 COL4A6Q14031 1691 aa7.08□□□□□ -1.28
TCF4-249ENST00000625716 SIP14410 1827 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 CARNS1A5YM72 827 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 LRRIQ4A6NIV6 560 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 ADARB2-AS1A8MUL3 147 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 PIK3R2O00459 728 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 FGF18O76093 207 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 BMP15O95972 392 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 ITGB1P05556 798 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 HSP90AA1P07900 732 aaKnown RBP7.07□□□□□ -1.28
TCF4-249ENST00000625716 GLRA2P23416 452 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 PPM1AP35813 382 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 ARL2P36404 184 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 ALDH7A1P49419 539 aaKnown RBP7.07□□□□□ -1.28
TCF4-249ENST00000625716 PTENP60484 403 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 PSMA6P60900 246 aaKnown RBP7.07□□□□□ -1.28
TCF4-249ENST00000625716 TFF2Q03403 129 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 UBE3AQ05086 875 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 PPP2R5AQ15172 486 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 LONRF3Q496Y0 759 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 TCEAL5Q5H9L2 206 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 NOTUMQ6P988 496 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 ZBTB8OSQ8IWT0 167 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 IGSF22Q8N9C0 903 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 TMEM87AQ8NBN3 555 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 CNNM3Q8NE01 707 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 RASSF8Q8NHQ8 419 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 SPPL3Q8TCT6 385 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 ASAP3Q8TDY4 903 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 POF1BQ8WVV4 589 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 IFT74Q96LB3 600 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 CASD1Q96PB1 797 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 FAM193BQ96PV7 902 aaPredicted RBP7.07□□□□□ -1.28
TCF4-249ENST00000625716 C2orf40Q9H1Z8 148 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 UBE2ZQ9H832 354 aaPredicted RBP7.07□□□□□ -1.28
TCF4-249ENST00000625716 UBN1Q9NPG3 1134 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 XPNPEP1Q9NQW7 623 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 AGPAT5Q9NUQ2 364 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 DDX19AQ9NUU7 478 aaKnown RBP7.07□□□□□ -1.28
TCF4-249ENST00000625716 NOP53Q9NZM5 478 aaKnown RBP7.07□□□□□ -1.28
TCF4-249ENST00000625716 FAM50BQ9Y247 325 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 INPP5FQ9Y2H2 1132 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 PCDHB2Q9Y5E7 798 aa7.07□□□□□ -1.28
TCF4-249ENST00000625716 EVPLQ92817 2033 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 VWA3AA6NCI4 1184 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 TSPAN1O60635 241 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 ZNF623O75123 536 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 EYA4O95677 639 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 SSBP05455 408 aaKnown RBP eCLIP7.06□□□□□ -1.28
TCF4-249ENST00000625716 LINC00271P0C7V0 271 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 ITGA4P13612 1032 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 LIG1P18858 919 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 CYP11B2P19099 503 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 KCNA5P22460 613 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 CA8P35219 290 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 ATP2C1P98194 919 aaPredicted RBP7.06□□□□□ -1.28
TCF4-249ENST00000625716 CUL4AQ13619 759 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 CAPSQ13938 189 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 NOMO2Q5JPE7 1267 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 CLLU1OSQ5K130 101 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 ARL6IP4Q66PJ3 421 aaKnown RBP7.06□□□□□ -1.28
TCF4-249ENST00000625716 PDE12Q6L8Q7 609 aaKnown RBP7.06□□□□□ -1.28
TCF4-249ENST00000625716 KCNT2Q6UVM3 1135 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 C8orf86Q6ZUL3 223 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 APBB1IPQ7Z5R6 666 aaPredicted RBP7.06□□□□□ -1.28
TCF4-249ENST00000625716 RAB44Q7Z6P3 723 aaPredicted RBP7.06□□□□□ -1.28
TCF4-249ENST00000625716 HSCBQ8IWL3 235 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 DEPTORQ8TB45 409 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 KIFAP3Q92845 792 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 LPPQ93052 612 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 PABPC5Q96DU9 382 aaKnown RBP7.06□□□□□ -1.28
TCF4-249ENST00000625716 CCDC51Q96ER9 411 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 CALML4Q96GE6 196 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 TMEM169Q96HH4 297 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 INTS4Q96HW7 963 aaKnown RBP7.06□□□□□ -1.28
TCF4-249ENST00000625716 CPB2Q96IY4 423 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 SUSD3Q96L08 255 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 UHRF1Q96T88 793 aaPredicted RBP7.06□□□□□ -1.28
TCF4-249ENST00000625716 NFKBIZQ9BYH8 718 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 NT5C3AQ9H0P0 336 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 GBP3Q9H0R5 595 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 BHMT2Q9H2M3 363 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 CWH43Q9H720 699 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 MINDY3Q9H8M7 445 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 GPRC5CQ9NQ84 441 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 ENTPD7Q9NQZ7 604 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 TLR9Q9NR96 1032 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 PRMT7Q9NVM4 692 aaPredicted RBP7.06□□□□□ -1.28
TCF4-249ENST00000625716 CLDND1Q9NY35 253 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 SPG21Q9NZD8 308 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 KANSL3Q9P2N6 904 aa7.06□□□□□ -1.28
TCF4-249ENST00000625716 TFIP11Q9UBB9 837 aaKnown RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms