RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 SP3Q02447 781 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 PPIL2Q13356 520 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 SLC12A1Q13621 1099 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 ACVR2BQ13705 512 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 SLMAPQ14BN4 828 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 SV2CQ496J9 727 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 C15orf52Q6ZUT6 534 aaKnown RBP9.79□□□□□ -0.84
GGA3-223ENST00000621870 CENPUQ71F23 418 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 B4GALNT4Q76KP1 1039 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 TMC7Q7Z402 723 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 DHX40Q8IX18 779 aaKnown RBP9.79□□□□□ -0.84
GGA3-223ENST00000621870 DCP1BQ8IZD4 617 aaKnown RBP9.79□□□□□ -0.84
GGA3-223ENST00000621870 SHCBP1Q8NEM2 672 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 CCHCR1Q8TD31 782 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 ATP8B4Q8TF62 1192 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 IFT43Q96FT9 208 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 SLITRK1Q96PX8 696 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 PARVAQ9NVD7 372 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 LIMA1Q9UHB6 759 aaKnown RBP9.79□□□□□ -0.84
GGA3-223ENST00000621870 PCDHB2Q9Y5E7 798 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 CCDC188H7C350 402 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 CIB2O75838 187 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 DNAJB2P25686 324 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 EPHB4P54760 987 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 GNGT1P63211 74 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 COG7P83436 770 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 DGKZQ13574 1117 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 RBBP5Q15291 538 aaKnown RBP9.79□□□□□ -0.84
GGA3-223ENST00000621870 DCAF4L1Q3SXM0 396 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 EARS2Q5JPH6 523 aaKnown RBP9.79□□□□□ -0.84
GGA3-223ENST00000621870 HP1BP3Q5SSJ5 553 aaPredicted RBP9.79□□□□□ -0.84
GGA3-223ENST00000621870 TMTC4Q5T4D3 741 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 NFRKBQ6P4R8 1299 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 TRIM59Q8IWR1 403 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 LRRC8CQ8TDW0 803 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 KCNB2Q92953 911 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 EXT2Q93063 718 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 EPAS1Q99814 870 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 AGO4Q9HCK5 861 aaKnown RBP9.79□□□□□ -0.84
GGA3-223ENST00000621870 TMEM8AQ9HCN3 771 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 INTS9Q9NV88 658 aaKnown RBP9.79□□□□□ -0.84
GGA3-223ENST00000621870 LSM7Q9UK45 103 aaKnown RBP9.79□□□□□ -0.84
GGA3-223ENST00000621870 A6NNZ2 444 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 EIF3DO15371 548 aaKnown RBP eCLIP9.79□□□□□ -0.84
GGA3-223ENST00000621870 PPFIA4O75335 1185 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 CYBBP04839 570 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 PNMA6AP0CW24 399 aaPredicted RBP9.79□□□□□ -0.84
GGA3-223ENST00000621870 NAMPTP43490 491 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 ALDH1A3P47895 512 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 GALCP54803 685 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 ORC1Q13415 861 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 ZNF235Q14590 738 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 TUBB8Q3ZCM7 444 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 KIAA1755Q5JYT7 1200 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 PGBD3Q8N328 593 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 SAMD3Q8N6K7 520 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 SOCS4Q8WXH5 440 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 SEPT8Q92599 483 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 RMDN1Q96DB5 314 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 PURBQ96QR8 312 aaKnown RBP9.79□□□□□ -0.84
GGA3-223ENST00000621870 MKNK1Q9BUB5 465 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 MTMR12Q9C0I1 747 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 CAPN11Q9UMQ6 739 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 NFU1Q9UMS0 254 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 KIAA0100Q14667 2235 aaKnown RBP9.79□□□□□ -0.84
GGA3-223ENST00000621870 REREQ9P2R6 1566 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 ADCY3O60266 1144 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 RARRES1P49788 294 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 DCAF6Q58WW2 860 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 GJC2Q5T442 439 aaPredicted RBP9.79□□□□□ -0.84
GGA3-223ENST00000621870 GPAT2Q6NUI2 795 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 CPB2Q96IY4 423 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 DDX23Q9BUQ8 820 aaKnown RBP9.79□□□□□ -0.84
GGA3-223ENST00000621870 KLHL14Q9P2G3 628 aa9.79□□□□□ -0.84
GGA3-223ENST00000621870 CHORDC1Q9UHD1 332 aaPredicted RBP9.79□□□□□ -0.84
GGA3-223ENST00000621870 H3BRJ5 948 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 SEC31AO94979 1220 aaKnown RBP9.78□□□□□ -0.84
GGA3-223ENST00000621870 GTF2H1P32780 548 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 ASPHQ12797 758 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 STILQ15468 1287 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 C4orf19Q8IY42 314 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 KCTD17Q8N5Z5 321 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 ZC3H15Q8WU90 426 aaKnown RBP9.78□□□□□ -0.84
GGA3-223ENST00000621870 COPS5Q92905 334 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 PABPC5Q96DU9 382 aaKnown RBP9.78□□□□□ -0.84
GGA3-223ENST00000621870 CFAP57Q96MR6 1250 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 CAMKK2Q96RR4 588 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 TRIM56Q9BRZ2 755 aaKnown RBP9.78□□□□□ -0.84
GGA3-223ENST00000621870 IRX2Q9BZI1 471 aaPredicted RBP9.78□□□□□ -0.84
GGA3-223ENST00000621870 SARS2Q9NP81 518 aaKnown RBP9.78□□□□□ -0.84
GGA3-223ENST00000621870 SAYSD1Q9NPB0 183 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 AAASQ9NRG9 546 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.78□□□□□ -0.844e-11■■■■□ 24.4
GGA3-223ENST00000621870 WDR91A4D1P6 747 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 DFFAO00273 331 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 CA4P22748 312 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 TPI1P60174 286 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 GRIK4Q16099 956 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 FSCN1Q16658 493 aaKnown RBP9.78□□□□□ -0.84
GGA3-223ENST00000621870 TTC19Q6DKK2 380 aaPredicted RBP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms