RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 DYDC2Q96IM9 177 aa7.4□□□□□ -1.22
NEDD9-216ENST00000620854 PCDHB18PQ96TA0 734 aa7.4□□□□□ -1.22
NEDD9-216ENST00000620854 MAK16Q9BXY0 300 aaKnown RBP7.4□□□□□ -1.22
NEDD9-216ENST00000620854 DDX4Q9NQI0 724 aaKnown RBP7.4□□□□□ -1.22
NEDD9-216ENST00000620854 ARHGEF3Q9NR81 526 aa7.4□□□□□ -1.22
NEDD9-216ENST00000620854 CPSF2Q9P2I0 782 aaKnown RBP7.4□□□□□ -1.22
NEDD9-216ENST00000620854 TXNDC9O14530 226 aa7.4□□□□□ -1.23
NEDD9-216ENST00000620854 FOSP01100 380 aaPredicted RBP7.4□□□□□ -1.23
NEDD9-216ENST00000620854 LINGO3P0C6S8 592 aa7.4□□□□□ -1.23
NEDD9-216ENST00000620854 GM2AP17900 193 aa7.4□□□□□ -1.23
NEDD9-216ENST00000620854 RPA1P27694 616 aa7.4□□□□□ -1.23
NEDD9-216ENST00000620854 HOXA10P31260 410 aaPredicted RBP7.4□□□□□ -1.23
NEDD9-216ENST00000620854 GBP1P32455 592 aa7.4□□□□□ -1.23
NEDD9-216ENST00000620854 NPEPPSP55786 919 aa7.4□□□□□ -1.23
NEDD9-216ENST00000620854 TGFB2P61812 414 aa7.4□□□□□ -1.23
NEDD9-216ENST00000620854 IRX1P78414 480 aaPredicted RBP7.4□□□□□ -1.23
NEDD9-216ENST00000620854 CLUL1Q15846 466 aa7.4□□□□□ -1.23
NEDD9-216ENST00000620854 CFAP157Q5JU67 520 aa7.4□□□□□ -1.23
NEDD9-216ENST00000620854 RNF220Q5VTB9 566 aa7.4□□□□□ -1.23
NEDD9-216ENST00000620854 TMEM154Q6P9G4 183 aa7.4□□□□□ -1.23
NEDD9-216ENST00000620854 RUNDC3BQ96NL0 473 aa7.4□□□□□ -1.23
NEDD9-216ENST00000620854 TSC22D3Q99576 134 aa7.4□□□□□ -1.23
NEDD9-216ENST00000620854 KCNMB3Q9NPA1 279 aa7.4□□□□□ -1.23
NEDD9-216ENST00000620854 ZFATQ9P243 1243 aa7.4□□□□□ -1.23
NEDD9-216ENST00000620854 PARP2Q9UGN5 583 aa7.4□□□□□ -1.23
NEDD9-216ENST00000620854 GNAT1P11488 350 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 PPP2R5EQ16537 467 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 CCDC88AQ3V6T2 1871 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 FYB2Q5VWT5 728 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 MCF2L2Q86YR7 1114 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 GBP7Q8N8V2 638 aaPredicted RBP7.39□□□□□ -1.23
NEDD9-216ENST00000620854 CKAP2Q8WWK9 683 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 DHX38Q92620 1227 aaKnown RBP7.39□□□□□ -1.23
NEDD9-216ENST00000620854 HAUS1Q96CS2 278 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 RPS6KC1Q96S38 1066 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 ZNF341Q9BYN7 854 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 PARVGQ9HBI0 331 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 AAASQ9NRG9 546 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 HERC5Q9UII4 1024 aaKnown RBP7.39□□□□□ -1.23
NEDD9-216ENST00000620854 CNOT7Q9UIV1 285 aaKnown RBP7.39□□□□□ -1.23
NEDD9-216ENST00000620854 DOCK2Q92608 1830 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 GPR75-ASB3A0A0A6YYF3 556 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 hCG_1984214I3L0E3 225 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 MSH4O15457 936 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 UNC5CO95185 931 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 TTC4O95801 387 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 ATP4AP20648 1035 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 CA4P22748 312 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 RFC5P40937 340 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 IREB2P48200 963 aaKnown RBP7.39□□□□□ -1.23
NEDD9-216ENST00000620854 RHBDL3P58872 404 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 PPP4CP60510 307 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 GRIK3Q13003 919 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 LIN9Q5TKA1 542 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 CGB2Q6NT52 195 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 CDC42EP5Q6NZY7 148 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 ARHGEF18Q6ZSZ5 1173 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 APOBEC3FQ8IUX4 373 aaKnown RBP7.39□□□□□ -1.23
NEDD9-216ENST00000620854 RHOT2Q8IXI1 618 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 MICALL2Q8IY33 904 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 SLFN12Q8IYM2 578 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 ZNF713Q8N859 430 aaPredicted RBP7.39□□□□□ -1.23
NEDD9-216ENST00000620854 DDX50Q9BQ39 737 aaKnown RBP7.39□□□□□ -1.23
NEDD9-216ENST00000620854 TBC1D10AQ9BXI6 508 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 GPR88Q9GZN0 384 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 NPHS2Q9NP85 383 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 ANAPC7Q9UJX3 599 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 R3HDM2Q9Y2K5 976 aaKnown RBP7.39□□□□□ -1.23
NEDD9-216ENST00000620854 PITPNM2Q9BZ72 1349 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 ALS2Q96Q42 1657 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.39□□□□□ -1.23
NEDD9-216ENST00000620854 A0A0G2JND7 137 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 LRRD1A4D1F6 860 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 CFAP69A5D8W1 941 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 BHMG1C9JSJ3 638 aaPredicted RBP7.39□□□□□ -1.23
NEDD9-216ENST00000620854 O00370 1275 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 ATF2P15336 505 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 RWDD2BP57060 319 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 PPP3CAQ08209 521 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 GALNTL6Q49A17 601 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 SYCP2LQ5T4T6 812 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 SYDE2Q5VT97 1194 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 CASC4Q6P4E1 433 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 AMIGO3Q86WK7 504 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 ZFPM1Q8IX07 1006 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 LMNTD2Q8IXW0 634 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 SCYL3Q8IZE3 742 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 ANKRD35Q8N283 1001 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 ANKLE1Q8NAG6 615 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 FAM13CQ8NE31 585 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 UCMAQ8WVF2 138 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 ART4Q93070 314 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 WRNIP1Q96S55 665 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 SYT15Q9BQS2 421 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 CBWD1Q9BRT8 395 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 UBN1Q9NPG3 1134 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 AGPAT3Q9NRZ7 376 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 PHTF1Q9UMS5 762 aa7.39□□□□□ -1.23
NEDD9-216ENST00000620854 EXOC1LA0A1B0GW35 172 aa7.38□□□□□ -1.23
NEDD9-216ENST00000620854 PI4K2BG5E9Z4 385 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms