RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 SHDQ96IW2 340 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 CDK5RAP3Q96JB5 506 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 ACAP3Q96P50 834 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 MYADMQ96S97 322 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 TCHPQ9BT92 498 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 KIFC3Q9BVG8 833 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 SLC2A4RGQ9NR83 387 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 CDH7Q9ULB5 785 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 KCNH3Q9ULD8 1083 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 SMIM28A0A1B0GU29 152 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 E9PMD0 336 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 H3BQV1 296 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 H7C4K7 107 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 SYN3O14994 580 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 BMP15O95972 392 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 KCNE1P15382 129 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 ABCD1P33897 745 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 OR1D2P34982 312 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 ATP2C1P98194 919 aaPredicted RBP13.06□□□□□ -0.32
UPF3B-204ENST00000619445 NBR1Q14596 966 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 KYAT1Q16773 422 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 AXDND1Q5T1B0 1012 aaPredicted RBP13.06□□□□□ -0.32
UPF3B-204ENST00000619445 CWF19L1Q69YN2 538 aaKnown RBP13.06□□□□□ -0.32
UPF3B-204ENST00000619445 PHLDB3Q6NSJ2 640 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 MPZL3Q6UWV2 235 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 ALKAL1Q6UXT8 129 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 ZPBP2Q6X784 338 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 C1orf186Q6ZWK4 172 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 CCDC105Q8IYK2 499 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 AK8Q96MA6 479 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 CDT1Q9H211 546 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 SMOC2Q9H3U7 446 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 PTPRHQ9HD43 1115 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 LARSQ9P2J5 1176 aaKnown RBP13.06□□□□□ -0.32
UPF3B-204ENST00000619445 MAFFQ9ULX9 164 aa13.06□□□□□ -0.32
UPF3B-204ENST00000619445 STK25O00506 426 aa13.05□□□□□ -0.32
UPF3B-204ENST00000619445 TOM1L1O75674 476 aa13.05□□□□□ -0.32
UPF3B-204ENST00000619445 PLS3P13797 630 aa13.05□□□□□ -0.32
UPF3B-204ENST00000619445 PROZP22891 400 aa13.05□□□□□ -0.32
UPF3B-204ENST00000619445 CLCNKBP51801 687 aa13.05□□□□□ -0.32
UPF3B-204ENST00000619445 HTR4Q13639 388 aa13.05□□□□□ -0.32
UPF3B-204ENST00000619445 C8orf34Q49A92 452 aa13.05□□□□□ -0.32
UPF3B-204ENST00000619445 DAW1Q8N136 415 aa13.05□□□□□ -0.32
UPF3B-204ENST00000619445 SLC7A14Q8TBB6 771 aa13.05□□□□□ -0.32
UPF3B-204ENST00000619445 TSPAN18Q96SJ8 248 aa13.05□□□□□ -0.32
UPF3B-204ENST00000619445 PHOX2BQ99453 314 aa13.05□□□□□ -0.32
UPF3B-204ENST00000619445 SEMA4AQ9H3S1 761 aa13.05□□□□□ -0.32
UPF3B-204ENST00000619445 SPTBN4Q9H254 2564 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 DOCK6Q96HP0 2047 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 EDN1P05305 212 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 CFHP08603 1231 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 NPR3P17342 541 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 ELF1P32519 619 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 PFKPQ01813 784 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 NOLC1Q14978 699 aaKnown RBP eCLIP13.04□□□□□ -0.32
UPF3B-204ENST00000619445 GLRA4Q5JXX5 417 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 SLC8B1Q6J4K2 584 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 GRASPQ7Z6J2 395 aaPredicted RBP13.04□□□□□ -0.32
UPF3B-204ENST00000619445 SYT2Q8N9I0 419 aaPredicted RBP13.04□□□□□ -0.32
UPF3B-204ENST00000619445 DTWD2Q8NBA8 298 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 APPL2Q8NEU8 664 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 ZNF461Q8TAF7 563 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 FEZF2Q8TBJ5 459 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 KCNN1Q92952 543 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 SNX27Q96L92 541 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 RUSC1Q9BVN2 902 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 TARS2Q9BW92 718 aaKnown RBP13.04□□□□□ -0.32
UPF3B-204ENST00000619445 OXCT2Q9BYC2 517 aaPredicted RBP13.04□□□□□ -0.32
UPF3B-204ENST00000619445 PLEKHA5Q9HAU0 1116 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 AVENQ9NQS1 362 aaPredicted RBP13.04□□□□□ -0.32
UPF3B-204ENST00000619445 ARHGEF3Q9NR81 526 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 FAM86C1Q9NVL1 165 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 GDE1Q9NZC3 331 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 CNTN3Q9P232 1028 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 CACNG4Q9UBN1 327 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 ODF2LQ9ULJ1 636 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 POLIQ9UNA4 740 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.04□□□□□ -0.32
UPF3B-204ENST00000619445 NUB1Q9Y5A7 615 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 CDY1Q9Y6F8 540 aa13.04□□□□□ -0.32
UPF3B-204ENST00000619445 GVINP1Q7Z2Y8 2422 aa13.03□□□□□ -0.32
UPF3B-204ENST00000619445 PODXLO00592 558 aa13.03□□□□□ -0.32
UPF3B-204ENST00000619445 CLDN3O15551 220 aa13.03□□□□□ -0.32
UPF3B-204ENST00000619445 XPOTO43592 962 aaKnown RBP13.03□□□□□ -0.32
UPF3B-204ENST00000619445 MYBP10242 640 aa13.03□□□□□ -0.32
UPF3B-204ENST00000619445 PAX3P23760 479 aa13.03□□□□□ -0.32
UPF3B-204ENST00000619445 MAPK7Q13164 816 aa13.03□□□□□ -0.32
UPF3B-204ENST00000619445 ZRSR1Q15695 479 aaKnown RBP13.03□□□□□ -0.32
UPF3B-204ENST00000619445 PABPC1LQ4VXU2 614 aaKnown RBP13.03□□□□□ -0.32
UPF3B-204ENST00000619445 TPGS2Q68CL5 300 aa13.03□□□□□ -0.32
UPF3B-204ENST00000619445 FGF13Q92913 245 aa13.03□□□□□ -0.32
UPF3B-204ENST00000619445 NKD2Q969F2 451 aaPredicted RBP13.03□□□□□ -0.32
UPF3B-204ENST00000619445 CALML4Q96GE6 196 aa13.03□□□□□ -0.32
UPF3B-204ENST00000619445 BORCS6Q96GS4 357 aa13.03□□□□□ -0.32
UPF3B-204ENST00000619445 TMX3Q96JJ7 454 aa13.03□□□□□ -0.32
UPF3B-204ENST00000619445 MMTAG2Q9BU76 263 aaKnown RBP13.03□□□□□ -0.32
UPF3B-204ENST00000619445 USP20Q9Y2K6 914 aa13.03□□□□□ -0.32
UPF3B-204ENST00000619445 NUMBLQ9Y6R0 609 aa13.03□□□□□ -0.32
UPF3B-204ENST00000619445 PDCD11Q14690 1871 aaKnown RBP13.02□□□□□ -0.33
UPF3B-204ENST00000619445 ARHGEF37A1IGU5 675 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms