RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CEP63Q96MT8 703 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 PBX4Q9BYU1 374 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 DNAJC25Q9H1X3 360 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 KANSL3Q9P2N6 904 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 HCSTQ9UBK5 93 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 FRMD4BQ9Y2L6 1034 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 YBX2Q9Y2T7 364 aaKnown RBP21.41■■□□□ 1.02
UPF3A-211ENST00000618700 TRIP11Q15643 1979 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 SOX1O00570 391 aaPredicted RBP21.4■■□□□ 1.02
UPF3A-211ENST00000618700 SLC16A3O15427 465 aaKnown RBP21.4■■□□□ 1.02
UPF3A-211ENST00000618700 POMCP01189 267 aa21.4■■□□□ 1.02
UPF3A-211ENST00000618700 LINC00271P0C7V0 271 aa21.4■■□□□ 1.02
UPF3A-211ENST00000618700 MYOGP15173 224 aa21.4■■□□□ 1.02
UPF3A-211ENST00000618700 PBX2P40425 430 aa21.4■■□□□ 1.02
UPF3A-211ENST00000618700 DSC1Q08554 894 aa21.4■■□□□ 1.02
UPF3A-211ENST00000618700 BTG3Q14201 252 aaPredicted RBP21.4■■□□□ 1.02
UPF3A-211ENST00000618700 PSMD6Q15008 389 aa21.4■■□□□ 1.02
UPF3A-211ENST00000618700 GLRA4Q5JXX5 417 aa21.4■■□□□ 1.02
UPF3A-211ENST00000618700 CSGALNACT2Q8N6G5 542 aa21.4■■□□□ 1.02
UPF3A-211ENST00000618700 TSPAN18Q96SJ8 248 aa21.4■■□□□ 1.02
UPF3A-211ENST00000618700 GZF1Q9H116 711 aaPredicted RBP21.4■■□□□ 1.02
UPF3A-211ENST00000618700 B4GALT3O60512 393 aa21.39■■□□□ 1.01
UPF3A-211ENST00000618700 THP07101 528 aa21.39■■□□□ 1.01
UPF3A-211ENST00000618700 PSMC2P35998 433 aaKnown RBP21.39■■□□□ 1.01
UPF3A-211ENST00000618700 RAB30Q15771 203 aa21.39■■□□□ 1.01
UPF3A-211ENST00000618700 ZBTB6Q15916 424 aa21.39■■□□□ 1.01
UPF3A-211ENST00000618700 ANO6Q4KMQ2 910 aa21.39■■□□□ 1.01
UPF3A-211ENST00000618700 EFCAB13Q8IY85 973 aa21.39■■□□□ 1.01
UPF3A-211ENST00000618700 FAM186BQ8IYM0 893 aa21.39■■□□□ 1.01
UPF3A-211ENST00000618700 PLEKHO2Q8TD55 490 aa21.39■■□□□ 1.01
UPF3A-211ENST00000618700 BORCS6Q96GS4 357 aa21.39■■□□□ 1.01
UPF3A-211ENST00000618700 CWH43Q9H720 699 aa21.39■■□□□ 1.01
UPF3A-211ENST00000618700 PDE11AQ9HCR9 933 aa21.39■■□□□ 1.01
UPF3A-211ENST00000618700 RTN4Q9NQC3 1192 aaKnown RBP21.39■■□□□ 1.01
UPF3A-211ENST00000618700 DERAQ9Y315 318 aa21.39■■□□□ 1.01
UPF3A-211ENST00000618700 C2CD2Q9Y426 696 aa21.39■■□□□ 1.01
UPF3A-211ENST00000618700 MRPL42Q9Y6G3 142 aaKnown RBP21.39■■□□□ 1.01
UPF3A-211ENST00000618700 TDRD15B5MCY1 1934 aaKnown RBP21.39■■□□□ 1.01
UPF3A-211ENST00000618700 LINC01553A4QN01 128 aa21.38■■□□□ 1.01
UPF3A-211ENST00000618700 ARHGEF15O94989 841 aa21.38■■□□□ 1.01
UPF3A-211ENST00000618700 CA3P07451 260 aa21.38■■□□□ 1.01
UPF3A-211ENST00000618700 NFICP08651 508 aa21.38■■□□□ 1.01
UPF3A-211ENST00000618700 MCCD1P59942 119 aaPredicted RBP21.38■■□□□ 1.01
UPF3A-211ENST00000618700 ENPEPQ07075 957 aa21.38■■□□□ 1.01
UPF3A-211ENST00000618700 JADE1Q6IE81 842 aa21.38■■□□□ 1.01
UPF3A-211ENST00000618700 FILIP1Q7Z7B0 1213 aa21.38■■□□□ 1.01
UPF3A-211ENST00000618700 ZNF280BQ86YH2 543 aa21.38■■□□□ 1.01
UPF3A-211ENST00000618700 FIBCD1Q8N539 461 aa21.38■■□□□ 1.01
UPF3A-211ENST00000618700 ENOX1Q8TC92 643 aaKnown RBP21.38■■□□□ 1.01
UPF3A-211ENST00000618700 CLP1Q92989 425 aaKnown RBP21.38■■□□□ 1.01
UPF3A-211ENST00000618700 NRDE2Q9H7Z3 1164 aa21.38■■□□□ 1.01
UPF3A-211ENST00000618700 KIAA1671Q9BY89 1806 aa21.38■■□□□ 1.01
UPF3A-211ENST00000618700 PTPRJQ12913 1337 aa21.37■■□□□ 1.01
UPF3A-211ENST00000618700 DDHD2O94830 711 aa21.37■■□□□ 1.01
UPF3A-211ENST00000618700 EPB41P11171 864 aaKnown RBP21.37■■□□□ 1.01
UPF3A-211ENST00000618700 DNAJB2P25686 324 aa21.37■■□□□ 1.01
UPF3A-211ENST00000618700 RNASELQ05823 741 aaKnown RBP21.37■■□□□ 1.01
UPF3A-211ENST00000618700 SOX4Q06945 474 aaPredicted RBP21.37■■□□□ 1.01
UPF3A-211ENST00000618700 SPAG1Q07617 926 aa21.37■■□□□ 1.01
UPF3A-211ENST00000618700 SURF1Q15526 300 aa21.37■■□□□ 1.01
UPF3A-211ENST00000618700 INTS8Q75QN2 995 aaKnown RBP21.37■■□□□ 1.01
UPF3A-211ENST00000618700 NT5DC4Q86YG4 428 aa21.37■■□□□ 1.01
UPF3A-211ENST00000618700 TMC2Q8TDI7 906 aa21.37■■□□□ 1.01
UPF3A-211ENST00000618700 PARD3BQ8TEW8 1205 aa21.37■■□□□ 1.01
UPF3A-211ENST00000618700 BPIFA3Q9BQP9 254 aa21.37■■□□□ 1.01
UPF3A-211ENST00000618700 SRRTQ9BXP5 876 aaKnown RBP21.37■■□□□ 1.01
UPF3A-211ENST00000618700 SLC38A7Q9NVC3 462 aa21.37■■□□□ 1.01
UPF3A-211ENST00000618700 MSRAQ9UJ68 235 aa21.37■■□□□ 1.01
UPF3A-211ENST00000618700 CLDN10P78369 228 aa21.36■■□□□ 1.01
UPF3A-211ENST00000618700 TUSC3Q13454 348 aa21.36■■□□□ 1.01
UPF3A-211ENST00000618700 TMEM132DQ14C87 1099 aa21.36■■□□□ 1.01
UPF3A-211ENST00000618700 SPATA1Q5VX52 437 aa21.36■■□□□ 1.01
UPF3A-211ENST00000618700 COLGALT2Q8IYK4 626 aa21.36■■□□□ 1.01
UPF3A-211ENST00000618700 C18orf25Q96B23 403 aaPredicted RBP21.36■■□□□ 1.01
UPF3A-211ENST00000618700 LRCH3Q96II8 777 aa21.36■■□□□ 1.01
UPF3A-211ENST00000618700 CGRRF1Q99675 332 aa21.36■■□□□ 1.01
UPF3A-211ENST00000618700 DNAJB4Q9UDY4 337 aa21.36■■□□□ 1.01
UPF3A-211ENST00000618700 TUBGCP4Q9UGJ1 667 aa21.36■■□□□ 1.01
UPF3A-211ENST00000618700 UBQLN1Q9UMX0 589 aaKnown RBP21.36■■□□□ 1.01
UPF3A-211ENST00000618700 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.36■■□□□ 1.01
UPF3A-211ENST00000618700 CHD7Q9P2D1 2997 aa21.35■■□□□ 1.01
UPF3A-211ENST00000618700 LRRIQ3A6PVS8 624 aaPredicted RBP21.35■■□□□ 1.01
UPF3A-211ENST00000618700 FGFR1OPO95684 399 aaKnown RBP21.35■■□□□ 1.01
UPF3A-211ENST00000618700 CYP3A5P20815 502 aa21.35■■□□□ 1.01
UPF3A-211ENST00000618700 MARSP56192 900 aaKnown RBP21.35■■□□□ 1.01
UPF3A-211ENST00000618700 ZNF445P59923 1031 aa21.35■■□□□ 1.01
UPF3A-211ENST00000618700 MYL5Q02045 173 aa21.35■■□□□ 1.01
UPF3A-211ENST00000618700 BFSP1Q12934 665 aa21.35■■□□□ 1.01
UPF3A-211ENST00000618700 IRF2BP1Q8IU81 584 aa21.35■■□□□ 1.01
UPF3A-211ENST00000618700 WDR49Q8IV35 697 aa21.35■■□□□ 1.01
UPF3A-211ENST00000618700 SLC39A7Q92504 469 aa21.35■■□□□ 1.01
UPF3A-211ENST00000618700 TMEM175Q9BSA9 504 aa21.35■■□□□ 1.01
UPF3A-211ENST00000618700 NAT10Q9H0A0 1025 aaKnown RBP21.35■■□□□ 1.01
UPF3A-211ENST00000618700 NKX2-4Q9H2Z4 354 aa21.35■■□□□ 1.01
UPF3A-211ENST00000618700 THAP9Q9H5L6 903 aa21.35■■□□□ 1.01
UPF3A-211ENST00000618700 NFE2L3Q9Y4A8 694 aa21.35■■□□□ 1.01
UPF3A-211ENST00000618700 XPOTO43592 962 aaKnown RBP21.34■■□□□ 1.01
UPF3A-211ENST00000618700 ZC3H11AO75152 810 aaKnown RBP eCLIP21.34■■□□□ 1.01
UPF3A-211ENST00000618700 GNA14O95837 355 aa21.34■■□□□ 1.01
UPF3A-211ENST00000618700 LAG3P18627 525 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms