RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 DNAJC24Q6P3W2 148 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 SLFN11Q7Z7L1 901 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 ACER1Q8TDN7 264 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 AGAP1Q9UPQ3 857 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 CNTNAP4Q9C0A0 1308 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.37□□□□□ -0.27
LIG1-221ENST00000613670 PPIP5K2O43314 1243 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 TM4SF1P30408 202 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 GSCP56915 257 aaPredicted RBP13.37□□□□□ -0.27
LIG1-221ENST00000613670 MKRN3Q13064 507 aaKnown RBP13.37□□□□□ -0.27
LIG1-221ENST00000613670 C11orf63Q6NUN7 778 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 LLGL2Q6P1M3 1020 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 SCARA5Q6ZMJ2 495 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 OTOP1Q7RTM1 612 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 DEPTORQ8TB45 409 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 CALN1Q9BXU9 219 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 PPP1R1BQ9UD71 204 aaPredicted RBP13.37□□□□□ -0.27
LIG1-221ENST00000613670 ALDH1B1P30837 517 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 MTERF2Q49AM1 385 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 Q4G0T1 1027 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 LACTB2Q53H82 288 aaPredicted RBP13.37□□□□□ -0.27
LIG1-221ENST00000613670 CC2D2BQ6DHV5 1058 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 C1orf186Q6ZWK4 172 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 LDHDQ86WU2 507 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 GRAMD1AQ96CP6 724 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 TRIM11Q96F44 468 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 PAGR1Q9BTK6 254 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 RXFP1Q9HBX9 757 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 A1CFQ9NQ94 594 aaKnown RBP13.37□□□□□ -0.27
LIG1-221ENST00000613670 SCAF8Q9UPN6 1271 aaKnown RBP13.37□□□□□ -0.27
LIG1-221ENST00000613670 USP20Q9Y2K6 914 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 CBX6O95503 412 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 IL1R1P14778 569 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 MDH1BQ5I0G3 518 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 BSPRYQ5W0U4 402 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 ZDHHC24Q6UX98 284 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 SPIRE2Q8WWL2 714 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 SLCO1B3Q9NPD5 702 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 NINJ2Q9NZG7 142 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 STXBP5LQ9Y2K9 1186 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 RPTORQ8N122 1335 aa13.37□□□□□ -0.27
LIG1-221ENST00000613670 HAUS5O94927 633 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 YWHABP31946 246 aaKnown RBP13.36□□□□□ -0.27
LIG1-221ENST00000613670 HOXD13P35453 343 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 JAM2P57087 298 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 RNASELQ05823 741 aaKnown RBP13.36□□□□□ -0.27
LIG1-221ENST00000613670 ANKRD20A2Q5SQ80 823 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 ANKRD20A1Q5TYW2 823 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 FOXR2Q6PJQ5 311 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 LVRNQ6Q4G3 990 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 MOXD1Q6UVY6 613 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 ARHGAP24Q8N264 748 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 EPS8L1Q8TE68 723 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 TRIM55Q9BYV6 548 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 GJB6O95452 261 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 KITP10721 976 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 HSPA1LP34931 641 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 CPA2P48052 419 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 ACOT2P49753 483 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 PPATQ06203 517 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 BIRC2Q13490 618 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 UBAP2Q5T6F2 1119 aaKnown RBP13.36□□□□□ -0.27
LIG1-221ENST00000613670 RC3H1Q5TC82 1133 aaKnown RBP13.36□□□□□ -0.27
LIG1-221ENST00000613670 ZBTB10Q96DT7 871 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 PCDHB18PQ96TA0 734 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 KCNQ5Q9NR82 932 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 ZDHHC18Q9NUE0 388 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 GRHL1Q9NZI5 618 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 ATF5Q9Y2D1 282 aaPredicted RBP13.36□□□□□ -0.27
LIG1-221ENST00000613670 LRP6O75581 1613 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 NCANO14594 1321 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 ROBO3Q96MS0 1386 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 ATP5HO75947 161 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 TJP3O95049 919 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 SOX10P56693 466 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 RBBP5Q15291 538 aaKnown RBP13.36□□□□□ -0.27
LIG1-221ENST00000613670 TEX2Q8IWB9 1127 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 HIPK4Q8NE63 616 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 SCOCQ9UIL1 159 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 MAD1L1Q9Y6D9 718 aa13.36□□□□□ -0.27
LIG1-221ENST00000613670 C5orf60A6NFR6 353 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 MGRN1O60291 552 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 SKIP12755 728 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 CNGA1P29973 690 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 GNA15P30679 374 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 ALCAMQ13740 583 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 WDR78Q5VTH9 848 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 ACAD10Q6JQN1 1059 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 SCYL2Q6P3W7 929 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 CASC4Q6P4E1 433 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 RFX6Q8HWS3 928 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 CERS5Q8N5B7 392 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 NAF1Q96HR8 494 aaKnown RBP13.35□□□□□ -0.27
LIG1-221ENST00000613670 RAVER2Q9HCJ3 691 aaKnown RBP13.35□□□□□ -0.27
LIG1-221ENST00000613670 LRRC4BQ9NT99 713 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 WHRNQ9P202 907 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 STOML1Q9UBI4 398 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 PPARGC1AQ9UBK2 798 aaKnown RBP13.35□□□□□ -0.27
LIG1-221ENST00000613670 PCSK1NQ9UHG2 260 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 PCYOX1Q9UHG3 505 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms