RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 GDPD2Q9HCC8 539 aa21.07■□□□□ 0.96
UPF1-212ENST00000601689 EXOC1Q9NV70 894 aa21.07■□□□□ 0.96
UPF1-212ENST00000601689 CD207Q9UJ71 328 aa21.07■□□□□ 0.96
UPF1-212ENST00000601689 UBQLN1Q9UMX0 589 aaKnown RBP21.07■□□□□ 0.96
UPF1-212ENST00000601689 HPSEQ9Y251 543 aa21.07■□□□□ 0.96
UPF1-212ENST00000601689 NUB1Q9Y5A7 615 aa21.07■□□□□ 0.96
UPF1-212ENST00000601689 BRWD1Q9NSI6 2320 aa21.07■□□□□ 0.96
UPF1-212ENST00000601689 UNC80Q8N2C7 3258 aa21.07■□□□□ 0.96
UPF1-212ENST00000601689 UBE4BO95155 1302 aa21.06■□□□□ 0.96
UPF1-212ENST00000601689 TMEM189-UBE2V1I3L0A0 370 aa21.06■□□□□ 0.96
UPF1-212ENST00000601689 TULP1O00294 542 aaPredicted RBP21.06■□□□□ 0.96
UPF1-212ENST00000601689 PRPF6O94906 941 aaKnown RBP21.06■□□□□ 0.96
UPF1-212ENST00000601689 HOXB8P17481 243 aaPredicted RBP21.06■□□□□ 0.96
UPF1-212ENST00000601689 GARTP22102 1010 aa21.06■□□□□ 0.96
UPF1-212ENST00000601689 CLCNKBP51801 687 aa21.06■□□□□ 0.96
UPF1-212ENST00000601689 NDUFA8P51970 172 aa21.06■□□□□ 0.96
UPF1-212ENST00000601689 PSMD2Q13200 908 aa21.06■□□□□ 0.96
UPF1-212ENST00000601689 PTPN14Q15678 1187 aa21.06■□□□□ 0.96
UPF1-212ENST00000601689 PTCRAQ6ISU1 281 aaPredicted RBP21.06■□□□□ 0.96
UPF1-212ENST00000601689 ARMCX5Q6P1M9 558 aa21.06■□□□□ 0.96
UPF1-212ENST00000601689 CEP57Q86XR8 500 aa21.06■□□□□ 0.96
UPF1-212ENST00000601689 PAGE5Q96GU1 130 aa21.06■□□□□ 0.96
UPF1-212ENST00000601689 STRA6Q9BX79 667 aa21.06■□□□□ 0.96
UPF1-212ENST00000601689 HOOK1Q9UJC3 728 aaKnown RBP21.06■□□□□ 0.96
UPF1-212ENST00000601689 STYXL1Q9Y6J8 313 aa21.06■□□□□ 0.96
UPF1-212ENST00000601689 TCF20Q9UGU0 1960 aaKnown RBP21.05■□□□□ 0.96
UPF1-212ENST00000601689 FAM237AA0A1B0GTK4 181 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 ANKRD63C9JTQ0 380 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 KIF20AO95235 890 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 SNRPFP62306 86 aaKnown RBP21.05■□□□□ 0.96
UPF1-212ENST00000601689 DSG1Q02413 1049 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 CUL4BQ13620 913 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 UPP1Q16831 310 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 FAM171A1Q5VUB5 890 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 LLGL2Q6P1M3 1020 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 TMEM184AQ6ZMB5 413 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 HS2ST1Q7LGA3 356 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 BEST2Q8NFU1 509 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 HASPINQ8TF76 798 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 AUTS2Q8WXX7 1259 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 CHAMP1Q96JM3 812 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 TTPALQ9BTX7 342 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 ASB7Q9H672 318 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 DZANK1Q9NVP4 752 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 CHMP5Q9NZZ3 219 aa21.05■□□□□ 0.96
UPF1-212ENST00000601689 CPSF3Q9UKF6 684 aaKnown RBP21.05■□□□□ 0.96
UPF1-212ENST00000601689 PDCD11Q14690 1871 aaKnown RBP21.05■□□□□ 0.96
UPF1-212ENST00000601689 REV3LO60673 3130 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 TTC26A0AVF1 554 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 PODXLO00592 558 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 LINC01565O15544 149 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 ACTN4O43707 911 aaKnown RBP21.04■□□□□ 0.96
UPF1-212ENST00000601689 CLASP2O75122 1294 aaKnown RBP21.04■□□□□ 0.96
UPF1-212ENST00000601689 ZNF202O95125 648 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 KIF4AO95239 1232 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 IL18RAPO95256 599 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 CYP3A5P20815 502 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 TNFSF9P41273 254 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 ACOT2P49753 483 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 KCNQ1P51787 676 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 NAB2Q15742 525 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 CES5AQ6NT32 575 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 NOC3LQ8WTT2 800 aaKnown RBP21.04■□□□□ 0.96
UPF1-212ENST00000601689 RABGGTAQ92696 567 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 PAAF1Q9BRP4 392 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 GPR62Q9BZJ7 368 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 HAPLN2Q9GZV7 340 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 CHST7Q9NS84 486 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 DERAQ9Y315 318 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 HCFC2Q9Y5Z7 792 aa21.04■□□□□ 0.96
UPF1-212ENST00000601689 LACTBL1A8MY62 500 aa21.03■□□□□ 0.96
UPF1-212ENST00000601689 BMP1P13497 986 aa21.03■□□□□ 0.96
UPF1-212ENST00000601689 PAX3P23760 479 aa21.03■□□□□ 0.96
UPF1-212ENST00000601689 CASP5P51878 434 aa21.03■□□□□ 0.96
UPF1-212ENST00000601689 SMAD4Q13485 552 aaKnown RBP21.03■□□□□ 0.96
UPF1-212ENST00000601689 ENOX2Q16206 610 aaKnown RBP21.03■□□□□ 0.96
UPF1-212ENST00000601689 SLC39A4Q6P5W5 647 aa21.03■□□□□ 0.96
UPF1-212ENST00000601689 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.03■□□□□ 0.96
UPF1-212ENST00000601689 NT5DC4Q86YG4 428 aa21.03■□□□□ 0.96
UPF1-212ENST00000601689 RNF168Q8IYW5 571 aaPredicted RBP21.03■□□□□ 0.96
UPF1-212ENST00000601689 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.03■□□□□ 0.96
UPF1-212ENST00000601689 ZNF507Q8TCN5 953 aa21.03■□□□□ 0.96
UPF1-212ENST00000601689 RIN2Q8WYP3 895 aaPredicted RBP21.03■□□□□ 0.96
UPF1-212ENST00000601689 ZMAT2Q96NC0 199 aaKnown RBP21.03■□□□□ 0.96
UPF1-212ENST00000601689 KLHL5Q96PQ7 755 aa21.03■□□□□ 0.96
UPF1-212ENST00000601689 KIAA1586Q9HCI6 787 aa21.03■□□□□ 0.96
UPF1-212ENST00000601689 CGNQ9P2M7 1197 aaKnown RBP21.03■□□□□ 0.96
UPF1-212ENST00000601689 BARX2Q9UMQ3 279 aaPredicted RBP21.03■□□□□ 0.96
UPF1-212ENST00000601689 R3HCC1Q9Y3T6 440 aaKnown RBP21.03■□□□□ 0.96
UPF1-212ENST00000601689 ARHGEF37A1IGU5 675 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 GRXCR2A6NFK2 248 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 DLL1O00548 723 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 TBX10O75333 385 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 CNPP09543 421 aaKnown RBP21.02■□□□□ 0.96
UPF1-212ENST00000601689 LTBRP36941 435 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 KCNA1Q09470 495 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 TMEM132DQ14C87 1099 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 CLUL1Q15846 466 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 KIAA0319Q5VV43 1072 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 ANKRD54Q6NXT1 300 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms