RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ZBTB41Q5SVQ8 909 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 KIAA0319Q5VV43 1072 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 PTCRAQ6ISU1 281 aaPredicted RBP17.61■□□□□ 0.41
TRIM28-213ENST00000598355 CD300LGQ6UXG3 332 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 TAS1R1Q7RTX1 841 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 RXFP1Q9HBX9 757 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 SLC38A7Q9NVC3 462 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 CD207Q9UJ71 328 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 CPSF3Q9UKF6 684 aaKnown RBP17.61■□□□□ 0.41
TRIM28-213ENST00000598355 SF3B1O75533 1304 aaKnown RBP eCLIP17.61■□□□□ 0.416e-7■■■□□ 15.3
TRIM28-213ENST00000598355 SCN1AP35498 2009 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 TISP43B9A030 160 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 MBTPS2O43462 519 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 GCNT3O95395 438 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 URODP06132 367 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 CNPP09543 421 aaKnown RBP17.6■□□□□ 0.41
TRIM28-213ENST00000598355 SLFN14P0C7P3 912 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 MYBP10242 640 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 IL9P15248 144 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 ADSSP30520 456 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 GLUD2P49448 558 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 SMAD2Q15796 467 aaKnown RBP17.6■□□□□ 0.41
TRIM28-213ENST00000598355 ZBTB6Q15916 424 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 ENOX2Q16206 610 aaKnown RBP17.6■□□□□ 0.41
TRIM28-213ENST00000598355 SEZ6Q53EL9 994 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 UNC13DQ70J99 1090 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 EPM2AIP1Q7L775 607 aaPredicted RBP17.6■□□□□ 0.41
TRIM28-213ENST00000598355 C3orf58Q8NDZ4 430 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 SLC22A17Q8WUG5 538 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 RABGGTAQ92696 567 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 IKZF4Q9H2S9 585 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 GOLGA2P5Q9HBQ8 144 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 MRPL17Q9NRX2 175 aaKnown RBP17.6■□□□□ 0.41
TRIM28-213ENST00000598355 USP25Q9UHP3 1055 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 SSX2IPQ9Y2D8 614 aa17.6■□□□□ 0.41
TRIM28-213ENST00000598355 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.6■□□□□ 0.41
TRIM28-213ENST00000598355 EIF3DO15371 548 aaKnown RBP eCLIP17.59■□□□□ 0.41
TRIM28-213ENST00000598355 C1RP00736 705 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 CLCNKBP51801 687 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 ASIC1P78348 528 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 ELAVL2Q12926 359 aaKnown RBP17.59■□□□□ 0.41
TRIM28-213ENST00000598355 USP41Q3LFD5 358 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 SLFN12LQ6IEE8 588 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 ANKRD54Q6NXT1 300 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 SYCE2Q6PIF2 218 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 GLIS3Q8NEA6 775 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 SUSD6Q92537 303 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 CASP10Q92851 521 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 KLHL5Q96PQ7 755 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 ACCSQ96QU6 501 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 TSPAN18Q96SJ8 248 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 UHRF1Q96T88 793 aaPredicted RBP17.59■□□□□ 0.41
TRIM28-213ENST00000598355 MSTO1Q9BUK6 570 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 TBC1D7Q9P0N9 293 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 EXOC7Q9UPT5 735 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 PCDHB13Q9Y5F0 798 aa17.59■□□□□ 0.41
TRIM28-213ENST00000598355 UBE4BO95155 1302 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 A0A1B0GVL5 298 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 PVALEFA0A1B0GWK0 134 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 DLL1O00548 723 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 PAPLNO95428 1278 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 SRGAP2BP0DMP2 458 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 HOXB8P17481 243 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-213ENST00000598355 IGFBP6P24592 240 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-213ENST00000598355 LRPAP1P30533 357 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 CLCN4P51793 760 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 RTP2Q5QGT7 225 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 FAM26FQ5R3K3 315 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 DCLRE1AQ6PJP8 1040 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 CRELD2Q6UXH1 353 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-213ENST00000598355 EP400NLQ6ZTU2 488 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 PPFIBP1Q86W92 1011 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 HASPINQ8TF76 798 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 PIK3R5Q8WYR1 880 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 DDX27Q96GQ7 796 aaKnown RBP17.58■□□□□ 0.4
TRIM28-213ENST00000598355 S1PR5Q9H228 398 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 FNIP2Q9P278 1114 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 SERTAD1Q9UHV2 236 aa17.58■□□□□ 0.4
TRIM28-213ENST00000598355 TEX28O15482 410 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 KLRC4O43908 158 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 TADA2AO75478 443 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 CYP3A5P20815 502 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 GARTP22102 1010 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 CASP1P29466 404 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 RPL9P32969 192 aaKnown RBP17.57■□□□□ 0.4
TRIM28-213ENST00000598355 HOXD13P35453 343 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 MATR3P43243 847 aaKnown RBP eCLIP17.57■□□□□ 0.4
TRIM28-213ENST00000598355 PPP2R3AQ06190 1150 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 CUL4BQ13620 913 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 POSTNQ15063 836 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.57■□□□□ 0.4
TRIM28-213ENST00000598355 CD302Q8IX05 232 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 C18orf25Q96B23 403 aaPredicted RBP17.57■□□□□ 0.4
TRIM28-213ENST00000598355 B3GALT6Q96L58 329 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 EMILIN2Q9BXX0 1053 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 GOLPH3LQ9H4A5 285 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 GDPD2Q9HCC8 539 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.57■□□□□ 0.48e-8■□□□□ 8.8
TRIM28-213ENST00000598355 DZANK1Q9NVP4 752 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 PRKAG3Q9UGI9 489 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms