RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 TAS1R2Q8TE23 839 aa15.84■□□□□ 0.13
VRK3-212ENST00000596814 SEPT8Q92599 483 aa15.84■□□□□ 0.13
VRK3-212ENST00000596814 APBB2Q92870 758 aa15.84■□□□□ 0.13
VRK3-212ENST00000596814 TTYH3Q9C0H2 523 aa15.84■□□□□ 0.13
VRK3-212ENST00000596814 RNF39Q9H2S5 420 aa15.84■□□□□ 0.13
VRK3-212ENST00000596814 PLCB1Q9NQ66 1216 aa15.84■□□□□ 0.13
VRK3-212ENST00000596814 RGS18Q9NS28 235 aa15.84■□□□□ 0.13
VRK3-212ENST00000596814 CNTN3Q9P232 1028 aa15.84■□□□□ 0.13
VRK3-212ENST00000596814 C2CD2Q9Y426 696 aa15.84■□□□□ 0.13
VRK3-212ENST00000596814 A0A0U1RQF3 1178 aa15.83■□□□□ 0.13
VRK3-212ENST00000596814 ZNF623O75123 536 aa15.83■□□□□ 0.13
VRK3-212ENST00000596814 PHACTR2O75167 634 aa15.83■□□□□ 0.13
VRK3-212ENST00000596814 CXCL10P02778 98 aa15.83■□□□□ 0.13
VRK3-212ENST00000596814 ACTN1P12814 892 aa15.83■□□□□ 0.13
VRK3-212ENST00000596814 MRPL10Q7Z7H8 261 aaKnown RBP15.83■□□□□ 0.13
VRK3-212ENST00000596814 EHBP1Q8NDI1 1231 aa15.83■□□□□ 0.13
VRK3-212ENST00000596814 DBF4BQ8NFT6 615 aa15.83■□□□□ 0.13
VRK3-212ENST00000596814 CACTINQ8WUQ7 758 aaKnown RBP15.83■□□□□ 0.13
VRK3-212ENST00000596814 LINC01599Q8WXQ3 324 aa15.83■□□□□ 0.13
VRK3-212ENST00000596814 KIF12Q96FN5 646 aa15.83■□□□□ 0.13
VRK3-212ENST00000596814 GANQ9H2C0 597 aa15.83■□□□□ 0.13
VRK3-212ENST00000596814 RAB20Q9NX57 234 aa15.83■□□□□ 0.13
VRK3-212ENST00000596814 KLK14Q9P0G3 267 aa15.83■□□□□ 0.13
VRK3-212ENST00000596814 DERAQ9Y315 318 aa15.83■□□□□ 0.13
VRK3-212ENST00000596814 KIAA0355O15063 1070 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 EPHB6O15197 1021 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 HLA-DRAP01903 254 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 CASP14P31944 242 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 RFC2P35250 354 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 FXR1P51114 621 aaKnown RBP eCLIP15.82■□□□□ 0.12
VRK3-212ENST00000596814 ALKAL1Q6UXT8 129 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 TRAPPC11Q7Z392 1133 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 CCDC150Q8NCX0 1101 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 LMO3Q8TAP4 145 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 CPLX3Q8WVH0 158 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 SEMA4DQ92854 862 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 PGBD4Q96DM1 585 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 TSPYL2Q9H2G4 693 aaPredicted RBP15.82■□□□□ 0.12
VRK3-212ENST00000596814 SIX2Q9NPC8 291 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 C1orf112Q9NSG2 853 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 A0A1W2PQJ5 194 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 TRIM43BA6NCK2 446 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 AKR1B15C9JRZ8 316 aaPredicted RBP15.82■□□□□ 0.12
VRK3-212ENST00000596814 MFAP3LO75121 409 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 NOL4O94818 638 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 VNN1O95497 513 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 TIMP1P01033 207 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 ATF7P17544 494 aaPredicted RBP15.82■□□□□ 0.12
VRK3-212ENST00000596814 IBSPP21815 317 aaPredicted RBP15.82■□□□□ 0.12
VRK3-212ENST00000596814 APBA1Q02410 837 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 XKR4Q5GH76 650 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 GLRA4Q5JXX5 417 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 KLHDC7AQ5VTJ3 777 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 DPY19L2P1Q6NXN4 242 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 SLC24A5Q71RS6 500 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 DEFB128Q7Z7B8 93 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 ECHDC2Q86YB7 292 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 CNGA4Q8IV77 575 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 RNF169Q8NCN4 708 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 LPPQ93052 612 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 TRIM43Q96BQ3 446 aaPredicted RBP15.82■□□□□ 0.12
VRK3-212ENST00000596814 CXCL16Q9H2A7 254 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 CEP72Q9P209 647 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 CAPN11Q9UMQ6 739 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 GIT1Q9Y2X7 761 aa15.82■□□□□ 0.12
VRK3-212ENST00000596814 MICAL3Q7RTP6 2002 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 MEIS3P2A8K0S8 358 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 C9IYK1 514 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 UCHL3P15374 230 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 KCNE1P15382 129 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 RAG1P15918 1043 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 MLH1P40692 756 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 POLR2FP61218 127 aaKnown RBP15.81■□□□□ 0.12
VRK3-212ENST00000596814 GOLGA8FQ08AF8 430 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 GOLGA8DPQ0D2H9 430 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 NCOA4Q13772 614 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 AGMOQ6ZNB7 445 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 CACNA2D4Q7Z3S7 1137 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 RTN4RL1Q86UN2 441 aaPredicted RBP15.81■□□□□ 0.12
VRK3-212ENST00000596814 ZMAT2Q96NC0 199 aaKnown RBP15.81■□□□□ 0.12
VRK3-212ENST00000596814 RPS6KC1Q96S38 1066 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 TSPAN18Q96SJ8 248 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 EDEM3Q9BZQ6 932 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 APEX2Q9UBZ4 518 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 FBXL5Q9UKA1 691 aa15.81■□□□□ 0.12
VRK3-212ENST00000596814 LUC7L2Q9Y383 392 aaKnown RBP15.81■□□□□ 0.12
VRK3-212ENST00000596814 ZC3H11AO75152 810 aaKnown RBP eCLIP15.8■□□□□ 0.12
VRK3-212ENST00000596814 LRRN2O75325 713 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 RFX1P22670 979 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 ADKP55263 362 aaKnown RBP15.8■□□□□ 0.12
VRK3-212ENST00000596814 TRPC3Q13507 836 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 ARID5BQ14865 1188 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 C1orf127Q8N9H9 656 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 TC2NQ8N9U0 490 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 ZNF397Q8NF99 534 aaPredicted RBP15.8■□□□□ 0.12
VRK3-212ENST00000596814 BEST2Q8NFU1 509 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 NT5C1BQ96P26 610 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 IMPG2Q9BZV3 1241 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 RSAD1Q9HA92 442 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 UBN1Q9NPG3 1134 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms