RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 ZFP42Q96MM3 310 aa11.49□□□□□ -0.57
LIG3-212ENST00000590181 KLHL5Q96PQ7 755 aa11.49□□□□□ -0.57
LIG3-212ENST00000590181 PYM1Q9BRP8 204 aaKnown RBP11.49□□□□□ -0.57
LIG3-212ENST00000590181 APOL6Q9BWW8 343 aa11.49□□□□□ -0.57
LIG3-212ENST00000590181 OXCT2Q9BYC2 517 aaPredicted RBP11.49□□□□□ -0.57
LIG3-212ENST00000590181 CUEDC2Q9H467 287 aa11.49□□□□□ -0.57
LIG3-212ENST00000590181 SNTG2Q9NY99 539 aa11.49□□□□□ -0.57
LIG3-212ENST00000590181 MAFFQ9ULX9 164 aa11.49□□□□□ -0.57
LIG3-212ENST00000590181 DNAH14Q0VDD8 3507 aa11.49□□□□□ -0.57
LIG3-212ENST00000590181 FANCMQ8IYD8 2048 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 EP300Q09472 2414 aaPredicted RBP11.48□□□□□ -0.57
LIG3-212ENST00000590181 NCOR2Q9Y618 2525 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 SLC16A4O15374 487 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 TBCAO75347 108 aaKnown RBP11.48□□□□□ -0.57
LIG3-212ENST00000590181 RECQL4O94761 1208 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 FAM13AO94988 1023 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 YEATS4O95619 227 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 PIGRP01833 764 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 CLTAP09496 248 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 CNPP09543 421 aaKnown RBP11.48□□□□□ -0.57
LIG3-212ENST00000590181 NASPP49321 788 aaPredicted RBP11.48□□□□□ -0.57
LIG3-212ENST00000590181 CLCN4P51793 760 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 AMPD3Q01432 767 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 MCL1Q07820 350 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 NOLC1Q14978 699 aaKnown RBP eCLIP11.48□□□□□ -0.57
LIG3-212ENST00000590181 POSTNQ15063 836 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 ZNF568Q3ZCX4 644 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 RRAGBQ5VZM2 374 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 FUT10Q6P4F1 479 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 SV2BQ7L1I2 683 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 KCNK18Q7Z418 384 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 HAUS6Q7Z4H7 955 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 GPBP1Q86WP2 473 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 ZDHHC14Q8IZN3 488 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 MYCT1Q8N699 235 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 C12orf76Q8N812 135 aaPredicted RBP11.48□□□□□ -0.57
LIG3-212ENST00000590181 FLCNQ8NFG4 579 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 STAMQ92783 540 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 TTPALQ9BTX7 342 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 MIOSQ9NXC5 875 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 ZDHHC7Q9NXF8 308 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 CFAP45Q9UL16 551 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 MTMR6Q9Y217 621 aa11.48□□□□□ -0.57
LIG3-212ENST00000590181 CEP250Q9BV73 2442 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 MIA3Q5JRA6 1907 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 SMIM28A0A1B0GU29 152 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 ARHGEF37A1IGU5 675 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 TRAK2O60296 914 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 GLUD1P00367 558 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 EPCAMP16422 314 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 LIG1P18858 919 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 PLCG1P19174 1290 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 CYP3A5P20815 502 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 CLCN5P51795 746 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 AFF1P51825 1210 aaKnown RBP11.47□□□□□ -0.57
LIG3-212ENST00000590181 GTF2BQ00403 316 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 NAB2Q15742 525 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 UVSSAQ2YD98 709 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 ARSHQ5FYA8 562 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.47□□□□□ -0.57
LIG3-212ENST00000590181 ANKS3Q6ZW76 656 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 STXBP4Q6ZWJ1 553 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 TMEM173Q86WV6 379 aaPredicted RBP11.47□□□□□ -0.57
LIG3-212ENST00000590181 CCDC105Q8IYK2 499 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 PIK3R5Q8WYR1 880 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 NXPE3Q969Y0 559 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 ACSF2Q96CM8 615 aaPredicted RBP11.47□□□□□ -0.57
LIG3-212ENST00000590181 PPP1R10Q96QC0 940 aaKnown RBP11.47□□□□□ -0.57
LIG3-212ENST00000590181 CDT1Q9H211 546 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 BLOC1S4Q9NUP1 217 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 MARCH5Q9NX47 278 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 CNTN3Q9P232 1028 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 FBXO2Q9UK22 296 aaPredicted RBP11.47□□□□□ -0.57
LIG3-212ENST00000590181 EXOC7Q9UPT5 735 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 CLIC4Q9Y696 253 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 ZFP37Q9Y6Q3 630 aaPredicted RBP11.47□□□□□ -0.57
LIG3-212ENST00000590181 EPG5Q9HCE0 2579 aa11.47□□□□□ -0.57
LIG3-212ENST00000590181 SPDYE4A6NLX3 237 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 PTGESO14684 152 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 SYN3O14994 580 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 ADRB2P07550 413 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 POU2F2P09086 479 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 HNRNPA1P09651 372 aaKnown RBP eCLIP11.46□□□□□ -0.57
LIG3-212ENST00000590181 AOC1P19801 751 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 UPP1Q16831 310 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 OTOP3Q7RTS5 596 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 GPR149Q86SP6 731 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 KCNG4Q8TDN1 519 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 BCL7CQ8WUZ0 217 aaPredicted RBP11.46□□□□□ -0.57
LIG3-212ENST00000590181 AUTS2Q8WXX7 1259 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 REEP2Q9BRK0 252 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 TARS2Q9BW92 718 aaKnown RBP11.46□□□□□ -0.57
LIG3-212ENST00000590181 VN1R3Q9BXE9 311 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 MAGEF1Q9HAY2 307 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 KLK14Q9P0G3 267 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 LIMD1Q9UGP4 676 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 TBX20Q9UMR3 447 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 GDAQ9Y2T3 454 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 PRG3Q9Y2Y8 225 aaPredicted RBP11.46□□□□□ -0.57
LIG3-212ENST00000590181 DERAQ9Y315 318 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms