RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	THBS2	P35442	1172 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	SLURP1	P55000	103 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	ROM1	Q03395	351 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	CACNB2	Q08289	660 aa	Predicted RBP	5.75	□□□□□ -1.49
SS18-223	ENST00000583595	NOG	Q13253	232 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	NFIX	Q14938	502 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	CHRNA2	Q15822	529 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	PFKFB4	Q16877	469 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	INTS11	Q5TA45	600 aa	Known RBP	5.75	□□□□□ -1.49
SS18-223	ENST00000583595	THEMIS2	Q5TEJ8	643 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	C1orf122	Q6ZSJ8	110 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	MIGA2	Q7L4E1	593 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	DCP2	Q8IU60	420 aa	Known RBP	5.75	□□□□□ -1.49
SS18-223	ENST00000583595	ADGRG2	Q8IZP9	1017 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	CELF5	Q8N6W0	485 aa	Known RBP	5.75	□□□□□ -1.49
SS18-223	ENST00000583595	GLB1L3	Q8NCI6	653 aa	Predicted RBP	5.75	□□□□□ -1.49
SS18-223	ENST00000583595	C3orf20	Q8ND61	904 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	OR10H5	Q8NGA6	315 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	SMARCC2	Q8TAQ2	1214 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	PHOSPHO1	Q8TCT1	267 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	RSAD2	Q8WXG1	361 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	C18orf8	Q96DM3	657 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	PTPN18	Q99952	460 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	AMN	Q9BXJ7	453 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	UNK	Q9C0B0	810 aa	Known RBP	5.75	□□□□□ -1.49
SS18-223	ENST00000583595	PDGFD	Q9GZP0	370 aa	Predicted RBP	5.75	□□□□□ -1.49
SS18-223	ENST00000583595	MTG2	Q9H4K7	406 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	PNPLA8	Q9NP80	782 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	VPS45	Q9NRW7	570 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	LMBRD1	Q9NUN5	540 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	PNPO	Q9NVS9	261 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	GGA3	Q9NZ52	723 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	PDP2	Q9P2J9	529 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	HDAC9	Q9UKV0	1011 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	PALD1	Q9ULE6	856 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	EIF4G1	Q04637	1599 aa	Known RBP	5.75	□□□□□ -1.49
SS18-223	ENST00000583595	NCAN	O14594	1321 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	SLC16A6	O15403	523 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	FOXD2	O60548	495 aa	Predicted RBP	5.74	□□□□□ -1.49
SS18-223	ENST00000583595	IFIT1	P09914	478 aa	Known RBP	5.74	□□□□□ -1.49
SS18-223	ENST00000583595	BRAF	P15056	766 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	FAH	P16930	419 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	SYN1	P17600	705 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	AOAH	P28039	575 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	KCNC1	P48547	511 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	ALDH9A1	P49189	494 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	ITGA8	P53708	1063 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	EIF5	P55010	431 aa	Known RBP	5.74	□□□□□ -1.49
SS18-223	ENST00000583595	DBP	Q10586	325 aa	Predicted RBP	5.74	□□□□□ -1.49
SS18-223	ENST00000583595	SLC35G1	Q2M3R5	365 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	RETSAT	Q6NUM9	610 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	FAM180B	Q6P0A1	224 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	LRSAM1	Q6UWE0	723 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	HEATR3	Q7Z4Q2	680 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	CACNA2D3	Q8IZS8	1091 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	TXLNB	Q8N3L3	684 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	ZNF566	Q969W8	418 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	NOX5	Q96PH1	765 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	FOXB1	Q99853	325 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	C7orf25	Q9BPX7	421 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	AP5M1	Q9H0R1	490 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	MAGEH1	Q9H213	219 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	OBP2B	Q9NPH6	170 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	JADE2	Q9NQC1	790 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	CLIC5	Q9NZA1	410 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	LRFN1	Q9P244	771 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	PCDHA6	Q9UN73	950 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	PCDHB6	Q9Y5E3	794 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	PCDHA1	Q9Y5I3	950 aa		5.74	□□□□□ -1.49
SS18-223	ENST00000583595	FOXN3	O00409	490 aa	Predicted RBP	5.73	□□□□□ -1.49
SS18-223	ENST00000583595	MBD4	O95243	580 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	CNOT4	O95628	575 aa	Known RBP	5.73	□□□□□ -1.49
SS18-223	ENST00000583595	MPIG6B	O95866	241 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	CD4	P01730	458 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	POLB	P06746	335 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	VEGFA	P15692	232 aa	Predicted RBP	5.73	□□□□□ -1.49
SS18-223	ENST00000583595	NPR1	P16066	1061 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	CNTF	P26441	200 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	EEF1G	P26641	437 aa	Known RBP	5.73	□□□□□ -1.49
SS18-223	ENST00000583595	SLC6A11	P48066	632 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	RXRG	P48443	463 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	MPP1	Q00013	466 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	ZACN	Q401N2	412 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	C3orf38	Q5JPI3	329 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	JMJD6	Q6NYC1	403 aa	Predicted RBP	5.73	□□□□□ -1.49
SS18-223	ENST00000583595	LIPI	Q6XZB0	460 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	GPATCH11	Q8N954	259 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	ATP11C	Q8NB49	1132 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	TRAPPC12	Q8WVT3	735 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	SEC14L1	Q92503	715 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	RPGR	Q92834	1020 aa	Known RBP	5.73	□□□□□ -1.49
SS18-223	ENST00000583595	NOL10	Q9BSC4	688 aa	Known RBP	5.73	□□□□□ -1.49
SS18-223	ENST00000583595	TMEM120A	Q9BXJ8	343 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	SLC39A2	Q9NP94	309 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	5.73	□□□□□ -1.49
SS18-223	ENST00000583595	FTSJ1	Q9UET6	329 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	5.73	□□□□□ -1.49
SS18-223	ENST00000583595	ABCF2	Q9UG63	623 aa		5.73	□□□□□ -1.49
SS18-223	ENST00000583595		A6NCN8	305 aa		5.72	□□□□□ -1.49
SS18-223	ENST00000583595	LGALS16	A8MUM7	142 aa		5.72	□□□□□ -1.49

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