RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 JAKMIP2Q96AA8 810 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 VTI1AQ96AJ9 217 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 ELMO3Q96BJ8 720 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 KREMEN1Q96MU8 473 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 OSMRQ99650 979 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 PI4K2AQ9BTU6 479 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 TRIM10Q9UDY6 481 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 GINS2Q9Y248 185 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 PCDHA13Q9Y5I0 950 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 RCCD1A6NED2 376 aa11.35□□□□□ -0.59
SS18-217ENST00000580958 FOXN3O00409 490 aaPredicted RBP11.35□□□□□ -0.59
SS18-217ENST00000580958 VNN1O95497 513 aa11.35□□□□□ -0.59
SS18-217ENST00000580958 GNRH1P01148 92 aa11.35□□□□□ -0.59
SS18-217ENST00000580958 VAV2P52735 878 aa11.35□□□□□ -0.59
SS18-217ENST00000580958 GNG11P61952 73 aa11.35□□□□□ -0.59
SS18-217ENST00000580958 PTK2Q05397 1052 aa11.35□□□□□ -0.59
SS18-217ENST00000580958 GFPT1Q06210 699 aaPredicted RBP11.35□□□□□ -0.59
SS18-217ENST00000580958 MAP3K21Q5TCX8 1036 aa11.35□□□□□ -0.59
SS18-217ENST00000580958 CATSPER4Q7RTX7 472 aa11.35□□□□□ -0.59
SS18-217ENST00000580958 WDR49Q8IV35 697 aa11.35□□□□□ -0.59
SS18-217ENST00000580958 TMEM192Q8IY95 271 aa11.35□□□□□ -0.59
SS18-217ENST00000580958 PPM1KQ8N3J5 372 aa11.35□□□□□ -0.59
SS18-217ENST00000580958 KLHDC9Q8NEP7 349 aa11.35□□□□□ -0.59
SS18-217ENST00000580958 KIF18AQ8NI77 898 aa11.35□□□□□ -0.59
SS18-217ENST00000580958 HELQQ8TDG4 1101 aa11.35□□□□□ -0.59
SS18-217ENST00000580958 ZNF296Q8WUU4 475 aaPredicted RBP11.35□□□□□ -0.59
SS18-217ENST00000580958 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.35□□□□□ -0.59
SS18-217ENST00000580958 IRX2Q9BZI1 471 aaPredicted RBP11.35□□□□□ -0.59
SS18-217ENST00000580958 RPF1Q9H9Y2 349 aaKnown RBP11.35□□□□□ -0.59
SS18-217ENST00000580958 DDX20Q9UHI6 824 aaKnown RBP11.35□□□□□ -0.59
SS18-217ENST00000580958 DNAI1Q9UI46 699 aa11.35□□□□□ -0.59
SS18-217ENST00000580958 BZW2Q9Y6E2 419 aaKnown RBP11.35□□□□□ -0.59
SS18-217ENST00000580958 A0A087X0T9 212 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 RBAK-RBAKDNI3L0D1 243 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 KIF5CO60282 957 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 ZC3H11AO75152 810 aaKnown RBP eCLIP11.34□□□□□ -0.59
SS18-217ENST00000580958 PHACTR2O75167 634 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 IL18RAPO95256 599 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 NPTXRO95502 500 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 ASGR1P07306 291 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 CLTAP09496 248 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 FAM228BP0C875 321 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 STAG3L1P0CL83 205 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 CXCL8P10145 99 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 DARSP14868 501 aaKnown RBP11.34□□□□□ -0.59
SS18-217ENST00000580958 CST5P28325 142 aaPredicted RBP11.34□□□□□ -0.59
SS18-217ENST00000580958 AP3M2P53677 418 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 MFAP3P55082 362 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 KCNA10Q16322 511 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 SLC18A3Q16572 532 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 FAM47CQ5HY64 1035 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 CCDC122Q5T0U0 273 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 GDF6Q6KF10 455 aaPredicted RBP11.34□□□□□ -0.59
SS18-217ENST00000580958 ZNF662Q6ZS27 426 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 EFCAB13Q8IY85 973 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 WDR24Q96S15 920 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 IFIH1Q9BYX4 1025 aaKnown RBP11.34□□□□□ -0.59
SS18-217ENST00000580958 LACRTQ9GZZ8 138 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 C1orf112Q9NSG2 853 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 GTF2IRD1Q9UHL9 959 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 GUCA1BQ9UMX6 200 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 SCN1AP35498 2009 aa11.34□□□□□ -0.59
SS18-217ENST00000580958 A0A1B0GUA9 196 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 LACTBL1A8MY62 500 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 FANCGO15287 622 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 MEFVO15553 781 aaPredicted RBP11.33□□□□□ -0.6
SS18-217ENST00000580958 PJA2O43164 708 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 CLSTN1O94985 981 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 INHAP05111 366 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 CCDC172P0C7W6 258 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 ANXA13P27216 316 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 USP8P40818 1118 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 TFAMQ00059 246 aaKnown RBP11.33□□□□□ -0.6
SS18-217ENST00000580958 SNX17Q15036 470 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 ARHGEF6Q15052 776 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 DUOXA2Q1HG44 320 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 DCAF4L1Q3SXM0 396 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 WDR44Q5JSH3 913 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 ZNF569Q5MCW4 686 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 SCARA3Q6AZY7 606 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 SPOPLQ6IQ16 392 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 CCSAPQ6IQ19 270 aaPredicted RBP11.33□□□□□ -0.6
SS18-217ENST00000580958 TRAPPC11Q7Z392 1133 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 FMNL3Q8IVF7 1028 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 SLC35F6Q8N357 371 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 NME8Q8N427 588 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 OLIG1Q8TAK6 271 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 LNX1Q8TBB1 728 aaPredicted RBP11.33□□□□□ -0.6
SS18-217ENST00000580958 PXYLP1Q8TE99 480 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 U2AF1L4Q8WU68 220 aaKnown RBP11.33□□□□□ -0.6
SS18-217ENST00000580958 SHC3Q92529 594 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 DHX38Q92620 1227 aaKnown RBP11.33□□□□□ -0.6
SS18-217ENST00000580958 ADPGKQ9BRR6 497 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 MTMR12Q9C0I1 747 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 SAGE1Q9NXZ1 904 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 ADAMTS1Q9UHI8 967 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 TSKSQ9UJT2 592 aa11.33□□□□□ -0.6
SS18-217ENST00000580958 DDX3XO00571 662 aaKnown RBP eCLIP11.32□□□□□ -0.6
SS18-217ENST00000580958 KRT86O43790 486 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 B4GALT4O60513 344 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms