RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 FAM189BP81408 668 aa16.5■□□□□ 0.23
SS18-215ENST00000580642 SEZ6Q53EL9 994 aa16.5■□□□□ 0.23
SS18-215ENST00000580642 SLC24A5Q71RS6 500 aa16.5■□□□□ 0.23
SS18-215ENST00000580642 SMG8Q8ND04 991 aaKnown RBP16.5■□□□□ 0.23
SS18-215ENST00000580642 OR8K1Q8NGG5 319 aa16.5■□□□□ 0.23
SS18-215ENST00000580642 LMO3Q8TAP4 145 aa16.5■□□□□ 0.23
SS18-215ENST00000580642 ZNF516Q92618 1163 aa16.5■□□□□ 0.23
SS18-215ENST00000580642 POP1Q99575 1024 aaKnown RBP16.5■□□□□ 0.23
SS18-215ENST00000580642 LSM14BQ9BX40 385 aaKnown RBP16.5■□□□□ 0.23
SS18-215ENST00000580642 NAA15Q9BXJ9 866 aaKnown RBP16.5■□□□□ 0.23
SS18-215ENST00000580642 TSPYL2Q9H2G4 693 aaPredicted RBP16.5■□□□□ 0.23
SS18-215ENST00000580642 ELAC1Q9H777 363 aaKnown RBP16.5■□□□□ 0.23
SS18-215ENST00000580642 FAM207AQ9NSI2 230 aaPredicted RBP16.5■□□□□ 0.23
SS18-215ENST00000580642 TMEM39AQ9NV64 488 aa16.5■□□□□ 0.23
SS18-215ENST00000580642 SNTG2Q9NY99 539 aa16.5■□□□□ 0.23
SS18-215ENST00000580642 ITGA11Q9UKX5 1188 aa16.5■□□□□ 0.23
SS18-215ENST00000580642 INPPL1O15357 1258 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 RECQL4O94761 1208 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 STAU1O95793 577 aaKnown RBP16.49■□□□□ 0.23
SS18-215ENST00000580642 ITGA4P13612 1032 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 UCHL3P15374 230 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 ATICP31939 592 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 HNRNPH3P31942 346 aaKnown RBP16.49■□□□□ 0.23
SS18-215ENST00000580642 OSTNP61366 133 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 TMEM132DQ14C87 1099 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 ZBTB6Q15916 424 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 SGSM1Q2NKQ1 1148 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 WDR44Q5JSH3 913 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 DPY19L2P1Q6NXN4 242 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 TRAPPC11Q7Z392 1133 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 CACNA2D4Q7Z3S7 1137 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 TMEM192Q8IY95 271 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 TC2NQ8N9U0 490 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 DNAJC7Q99615 494 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 ADAM2Q99965 735 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 CRACR2AQ9BSW2 395 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 IMPG2Q9BZV3 1241 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 GANQ9H2C0 597 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 NXF3Q9H4D5 531 aaKnown RBP16.49■□□□□ 0.23
SS18-215ENST00000580642 UBQLN1Q9UMX0 589 aaKnown RBP16.49■□□□□ 0.23
SS18-215ENST00000580642 ATP11BQ9Y2G3 1177 aa16.49■□□□□ 0.23
SS18-215ENST00000580642 NBNO60934 754 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 PHACTR2O75167 634 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 NOL4O94818 638 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 PFKMP08237 780 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 SLC9A1P19634 815 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 FECHP22830 423 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 PAX3P23760 479 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 CASP14P31944 242 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 KRT9P35527 623 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 CDK17Q00537 523 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 GCNT1Q02742 428 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 BIRC3Q13489 604 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 NCOA4Q13772 614 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 LRRC26Q2I0M4 334 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 TDRD10Q5VZ19 366 aaKnown RBP16.48■□□□□ 0.23
SS18-215ENST00000580642 LRRC8AQ8IWT6 810 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 BEST2Q8NFU1 509 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 TAS1R2Q8TE23 839 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 FAM212AQ96EL1 285 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 NT5C1BQ96P26 610 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 VRTNQ9H8Y1 702 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 SIX2Q9NPC8 291 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 SLC38A7Q9NVC3 462 aa16.48■□□□□ 0.23
SS18-215ENST00000580642 ZNHIT6Q9NWK9 470 aaKnown RBP16.48■□□□□ 0.23
SS18-215ENST00000580642 PTPRJQ12913 1337 aa16.47■□□□□ 0.23
SS18-215ENST00000580642 C9IYK1 514 aa16.47■□□□□ 0.23
SS18-215ENST00000580642 EFCAB14O75071 495 aa16.47■□□□□ 0.23
SS18-215ENST00000580642 TIMP1P01033 207 aa16.47■□□□□ 0.23
SS18-215ENST00000580642 HLA-DRAP01903 254 aa16.47■□□□□ 0.23
SS18-215ENST00000580642 CCDC172P0C7W6 258 aa16.47■□□□□ 0.23
SS18-215ENST00000580642 PIK3CAP42336 1068 aa16.47■□□□□ 0.23
SS18-215ENST00000580642 FXR1P51114 621 aaKnown RBP eCLIP16.47■□□□□ 0.23
SS18-215ENST00000580642 WNT7BP56706 349 aa16.47■□□□□ 0.23
SS18-215ENST00000580642 TFAMQ00059 246 aaKnown RBP16.47■□□□□ 0.23
SS18-215ENST00000580642 TRPC3Q13507 836 aa16.47■□□□□ 0.23
SS18-215ENST00000580642 JADE1Q6IE81 842 aa16.47■□□□□ 0.23
SS18-215ENST00000580642 EFCAB13Q8IY85 973 aa16.47■□□□□ 0.23
SS18-215ENST00000580642 OR5B17Q8NGF7 314 aa16.47■□□□□ 0.23
SS18-215ENST00000580642 BAP1Q92560 729 aa16.47■□□□□ 0.23
SS18-215ENST00000580642 STK33Q9BYT3 514 aa16.47■□□□□ 0.23
SS18-215ENST00000580642 ABHD10Q9NUJ1 306 aa16.47■□□□□ 0.23
SS18-215ENST00000580642 PLAGL2Q9UPG8 496 aa16.47■□□□□ 0.23
SS18-215ENST00000580642 R3HCC1Q9Y3T6 440 aaKnown RBP16.47■□□□□ 0.23
SS18-215ENST00000580642 SMIM28A0A1B0GU29 152 aa16.46■□□□□ 0.23
SS18-215ENST00000580642 MEFVO15553 781 aaPredicted RBP16.46■□□□□ 0.23
SS18-215ENST00000580642 ASS1P00966 412 aaKnown RBP16.46■□□□□ 0.23
SS18-215ENST00000580642 NFICP08651 508 aa16.46■□□□□ 0.23
SS18-215ENST00000580642 TBXAS1P24557 533 aaPredicted RBP16.46■□□□□ 0.23
SS18-215ENST00000580642 KLK7P49862 253 aa16.46■□□□□ 0.23
SS18-215ENST00000580642 MFAP3P55082 362 aa16.46■□□□□ 0.23
SS18-215ENST00000580642 POLR2FP61218 127 aaKnown RBP16.46■□□□□ 0.23
SS18-215ENST00000580642 RBP5P82980 135 aa16.46■□□□□ 0.23
SS18-215ENST00000580642 GPNMBQ14956 572 aa16.46■□□□□ 0.23
SS18-215ENST00000580642 ZNF598Q86UK7 904 aaKnown RBP16.46■□□□□ 0.23
SS18-215ENST00000580642 ECHDC2Q86YB7 292 aa16.46■□□□□ 0.23
SS18-215ENST00000580642 KIF12Q96FN5 646 aa16.46■□□□□ 0.23
SS18-215ENST00000580642 MTMR12Q9C0I1 747 aa16.46■□□□□ 0.23
SS18-215ENST00000580642 WNT8AQ9H1J5 351 aa16.46■□□□□ 0.23
SS18-215ENST00000580642 TMEM161AQ9NX61 479 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms