RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 SLC39A4Q6P5W5 647 aa21.24■□□□□ 0.99
SS18-209ENST00000578595 TAS1R1Q7RTX1 841 aa21.24■□□□□ 0.99
SS18-209ENST00000578595 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.24■□□□□ 0.99
SS18-209ENST00000578595 KCNN1Q92952 543 aa21.24■□□□□ 0.99
SS18-209ENST00000578595 KIF12Q96FN5 646 aa21.24■□□□□ 0.99
SS18-209ENST00000578595 UHRF1Q96T88 793 aaPredicted RBP21.24■□□□□ 0.99
SS18-209ENST00000578595 APOL5Q9BWW9 433 aa21.24■□□□□ 0.99
SS18-209ENST00000578595 FGFBP2Q9BYJ0 223 aa21.24■□□□□ 0.99
SS18-209ENST00000578595 CNTN3Q9P232 1028 aa21.24■□□□□ 0.99
SS18-209ENST00000578595 SSX2IPQ9Y2D8 614 aa21.24■□□□□ 0.99
SS18-209ENST00000578595 A0A0B4J269 797 aa21.23■□□□□ 0.99
SS18-209ENST00000578595 PPP1R37O75864 691 aa21.23■□□□□ 0.99
SS18-209ENST00000578595 B3GAT3O94766 335 aa21.23■□□□□ 0.99
SS18-209ENST00000578595 ACOT2P49753 483 aa21.23■□□□□ 0.99
SS18-209ENST00000578595 COL19A1Q14993 1142 aa21.23■□□□□ 0.99
SS18-209ENST00000578595 NAB2Q15742 525 aa21.23■□□□□ 0.99
SS18-209ENST00000578595 SLC10A6Q3KNW5 377 aa21.23■□□□□ 0.99
SS18-209ENST00000578595 USP41Q3LFD5 358 aa21.23■□□□□ 0.99
SS18-209ENST00000578595 FAM26FQ5R3K3 315 aa21.23■□□□□ 0.99
SS18-209ENST00000578595 ZBTB41Q5SVQ8 909 aa21.23■□□□□ 0.99
SS18-209ENST00000578595 GLYCTKQ8IVS8 523 aa21.23■□□□□ 0.99
SS18-209ENST00000578595 C18orf25Q96B23 403 aaPredicted RBP21.23■□□□□ 0.99
SS18-209ENST00000578595 UROC1Q96N76 676 aa21.23■□□□□ 0.99
SS18-209ENST00000578595 ZMAT2Q96NC0 199 aaKnown RBP21.23■□□□□ 0.99
SS18-209ENST00000578595 NECAB3Q96P71 396 aaPredicted RBP21.23■□□□□ 0.99
SS18-209ENST00000578595 C7orf25Q9BPX7 421 aa21.23■□□□□ 0.99
SS18-209ENST00000578595 GPR62Q9BZJ7 368 aa21.23■□□□□ 0.99
SS18-209ENST00000578595 AGO2Q9UKV8 859 aaKnown RBP21.23■□□□□ 0.99
SS18-209ENST00000578595 CLASP2O75122 1294 aaKnown RBP21.22■□□□□ 0.99
SS18-209ENST00000578595 SLFN14P0C7P3 912 aa21.22■□□□□ 0.99
SS18-209ENST00000578595 IL9P15248 144 aa21.22■□□□□ 0.99
SS18-209ENST00000578595 SOX4Q06945 474 aaPredicted RBP21.22■□□□□ 0.99
SS18-209ENST00000578595 CUL4BQ13620 913 aa21.22■□□□□ 0.99
SS18-209ENST00000578595 PUS10Q3MIT2 529 aaKnown RBP21.22■□□□□ 0.99
SS18-209ENST00000578595 FAM171A1Q5VUB5 890 aa21.22■□□□□ 0.99
SS18-209ENST00000578595 UNC13DQ70J99 1090 aa21.22■□□□□ 0.99
SS18-209ENST00000578595 VN1R2Q8NFZ6 395 aa21.22■□□□□ 0.99
SS18-209ENST00000578595 RIN2Q8WYP3 895 aaPredicted RBP21.22■□□□□ 0.99
SS18-209ENST00000578595 CASP10Q92851 521 aa21.22■□□□□ 0.99
SS18-209ENST00000578595 USP25Q9UHP3 1055 aa21.22■□□□□ 0.99
SS18-209ENST00000578595 NUB1Q9Y5A7 615 aa21.22■□□□□ 0.99
SS18-209ENST00000578595 HCFC2Q9Y5Z7 792 aa21.22■□□□□ 0.99
SS18-209ENST00000578595 PODXLO00592 558 aa21.21■□□□□ 0.99
SS18-209ENST00000578595 ACTN4O43707 911 aaKnown RBP21.21■□□□□ 0.99
SS18-209ENST00000578595 ADH1AP07327 375 aa21.21■□□□□ 0.99
SS18-209ENST00000578595 BMP1P13497 986 aa21.21■□□□□ 0.99
SS18-209ENST00000578595 KCNE1P15382 129 aa21.21■□□□□ 0.99
SS18-209ENST00000578595 NDUFA8P51970 172 aa21.21■□□□□ 0.99
SS18-209ENST00000578595 ELAVL2Q12926 359 aaKnown RBP21.21■□□□□ 0.99
SS18-209ENST00000578595 POSTNQ15063 836 aa21.21■□□□□ 0.99
SS18-209ENST00000578595 ENOX2Q16206 610 aaKnown RBP21.21■□□□□ 0.99
SS18-209ENST00000578595 ALKAL1Q6UXT8 129 aa21.21■□□□□ 0.99
SS18-209ENST00000578595 SAAL1Q96ER3 474 aa21.21■□□□□ 0.99
SS18-209ENST00000578595 TMEM206Q9H813 350 aa21.21■□□□□ 0.99
SS18-209ENST00000578595 PLEKHA5Q9HAU0 1116 aa21.21■□□□□ 0.99
SS18-209ENST00000578595 EXOC1Q9NV70 894 aa21.21■□□□□ 0.99
SS18-209ENST00000578595 CLEC1BQ9P126 229 aa21.21■□□□□ 0.99
SS18-209ENST00000578595 TUBGCP4Q9UGJ1 667 aa21.21■□□□□ 0.99
SS18-209ENST00000578595 IRAK3Q9Y616 596 aa21.21■□□□□ 0.99
SS18-209ENST00000578595 LACTBL1A8MY62 500 aa21.2■□□□□ 0.98
SS18-209ENST00000578595 XPOTO43592 962 aaKnown RBP21.2■□□□□ 0.98
SS18-209ENST00000578595 CNPP09543 421 aaKnown RBP21.2■□□□□ 0.98
SS18-209ENST00000578595 SMAD4Q13485 552 aaKnown RBP21.2■□□□□ 0.98
SS18-209ENST00000578595 XKR4Q5GH76 650 aa21.2■□□□□ 0.98
SS18-209ENST00000578595 ARMCX5Q6P1M9 558 aa21.2■□□□□ 0.98
SS18-209ENST00000578595 DCLRE1AQ6PJP8 1040 aa21.2■□□□□ 0.98
SS18-209ENST00000578595 PPFIBP1Q86W92 1011 aa21.2■□□□□ 0.98
SS18-209ENST00000578595 GLIS3Q8NEA6 775 aa21.2■□□□□ 0.98
SS18-209ENST00000578595 DDX27Q96GQ7 796 aaKnown RBP21.2■□□□□ 0.98
SS18-209ENST00000578595 PAGE5Q96GU1 130 aa21.2■□□□□ 0.98
SS18-209ENST00000578595 KLHL5Q96PQ7 755 aa21.2■□□□□ 0.98
SS18-209ENST00000578595 HPSEQ9Y251 543 aa21.2■□□□□ 0.98
SS18-209ENST00000578595 A0A0C4DFX4 3053 aa21.2■□□□□ 0.98
SS18-209ENST00000578595 C2orf16Q68DN1 1984 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 A0A1W2PQ27 194 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 A0A1W2PQ64 194 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 A0A1W2PQD8 194 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 TTC26A0AVF1 554 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 GRXCR2A6NFK2 248 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 I3L4J1 428 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 MEFVO15553 781 aaPredicted RBP21.19■□□□□ 0.98
SS18-209ENST00000578595 MBTPS2O43462 519 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 TRAPPC3O43617 180 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 EPCAMP16422 314 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 BRCC3P46736 316 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 DSG1Q02413 1049 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 UPP1Q16831 310 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 ANKRD54Q6NXT1 300 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 PRSS55Q6UWB4 352 aaPredicted RBP21.19■□□□□ 0.98
SS18-209ENST00000578595 NELFCDQ8IXH7 590 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 FAM213AQ9BRX8 229 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 TTPALQ9BTX7 342 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 STRA6Q9BX79 667 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 GOLPH3LQ9H4A5 285 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 PCIF1Q9H4Z3 704 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 SLC39A2Q9NP94 309 aa21.19■□□□□ 0.98
SS18-209ENST00000578595 CPSF3Q9UKF6 684 aaKnown RBP21.19■□□□□ 0.98
SS18-209ENST00000578595 UBQLN1Q9UMX0 589 aaKnown RBP21.19■□□□□ 0.98
SS18-209ENST00000578595 SCN1AP35498 2009 aa21.18■□□□□ 0.98
SS18-209ENST00000578595 GOLGA8IPA6NC78 632 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms