RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 NBR1Q14596 966 aa23.15■■□□□ 1.3
VPS53-216ENST00000574029 ALKAL1Q6UXT8 129 aa23.15■■□□□ 1.3
VPS53-216ENST00000574029 IGSF22Q8N9C0 903 aa23.15■■□□□ 1.3
VPS53-216ENST00000574029 C3orf58Q8NDZ4 430 aa23.15■■□□□ 1.3
VPS53-216ENST00000574029 PJA1Q8NG27 643 aa23.15■■□□□ 1.3
VPS53-216ENST00000574029 DDX27Q96GQ7 796 aaKnown RBP23.15■■□□□ 1.3
VPS53-216ENST00000574029 SHDQ96IW2 340 aa23.15■■□□□ 1.3
VPS53-216ENST00000574029 GOLGA2P5Q9HBQ8 144 aa23.15■■□□□ 1.3
VPS53-216ENST00000574029 PTPRHQ9HD43 1115 aa23.15■■□□□ 1.3
VPS53-216ENST00000574029 HCFC1R1Q9NWW0 138 aa23.15■■□□□ 1.3
VPS53-216ENST00000574029 DNMT3BQ9UBC3 853 aaKnown RBP23.15■■□□□ 1.3
VPS53-216ENST00000574029 KCNH3Q9ULD8 1083 aa23.15■■□□□ 1.3
VPS53-216ENST00000574029 STK24Q9Y6E0 443 aa23.15■■□□□ 1.3
VPS53-216ENST00000574029 VPS13AQ96RL7 3174 aa23.14■■□□□ 1.3
VPS53-216ENST00000574029 PHLPP2Q6ZVD8 1323 aa23.14■■□□□ 1.3
VPS53-216ENST00000574029 TRAPPC3O43617 180 aa23.14■■□□□ 1.29
VPS53-216ENST00000574029 FOXK2Q01167 660 aa23.14■■□□□ 1.29
VPS53-216ENST00000574029 GNL2Q13823 731 aaKnown RBP23.14■■□□□ 1.29
VPS53-216ENST00000574029 ANKS3Q6ZW76 656 aa23.14■■□□□ 1.29
VPS53-216ENST00000574029 CEP120Q8N960 986 aa23.14■■□□□ 1.29
VPS53-216ENST00000574029 ACO2Q99798 780 aaKnown RBP23.14■■□□□ 1.29
VPS53-216ENST00000574029 DDX23Q9BUQ8 820 aaKnown RBP23.14■■□□□ 1.29
VPS53-216ENST00000574029 FOXQ1Q9C009 403 aa23.14■■□□□ 1.29
VPS53-216ENST00000574029 CDT1Q9H211 546 aa23.14■■□□□ 1.29
VPS53-216ENST00000574029 TMEM134Q9H6X4 195 aa23.14■■□□□ 1.29
VPS53-216ENST00000574029 MIA3Q5JRA6 1907 aa23.14■■□□□ 1.29
VPS53-216ENST00000574029 FAM186AA6NE01 2351 aa23.13■■□□□ 1.29
VPS53-216ENST00000574029 GLULP15104 373 aa23.13■■□□□ 1.29
VPS53-216ENST00000574029 BRCC3P46736 316 aa23.13■■□□□ 1.29
VPS53-216ENST00000574029 NPTX2P47972 431 aa23.13■■□□□ 1.29
VPS53-216ENST00000574029 YARSP54577 528 aaKnown RBP23.13■■□□□ 1.29
VPS53-216ENST00000574029 PEX3P56589 373 aa23.13■■□□□ 1.29
VPS53-216ENST00000574029 SOX4Q06945 474 aaPredicted RBP23.13■■□□□ 1.29
VPS53-216ENST00000574029 PABPC1LQ4VXU2 614 aaKnown RBP23.13■■□□□ 1.29
VPS53-216ENST00000574029 C1orf210Q8IVY1 113 aa23.13■■□□□ 1.29
VPS53-216ENST00000574029 NPAS3Q8IXF0 933 aa23.13■■□□□ 1.29
VPS53-216ENST00000574029 DAW1Q8N136 415 aa23.13■■□□□ 1.29
VPS53-216ENST00000574029 SNX29Q8TEQ0 813 aa23.13■■□□□ 1.29
VPS53-216ENST00000574029 CCDC94Q9BW85 323 aaPredicted RBP23.13■■□□□ 1.29
VPS53-216ENST00000574029 TOPORSQ9NS56 1045 aaPredicted RBP23.13■■□□□ 1.29
VPS53-216ENST00000574029 R4GN57 208 aa23.13■■□□□ 1.29
VPS53-216ENST00000574029 FANCMQ8IYD8 2048 aa23.13■■□□□ 1.29
VPS53-216ENST00000574029 PTPRZ1P23471 2315 aaPredicted RBP23.13■■□□□ 1.29
VPS53-216ENST00000574029 COL4A3Q01955 1670 aa23.13■■□□□ 1.29
VPS53-216ENST00000574029 CCDC169A6NNP5 214 aa23.12■■□□□ 1.29
VPS53-216ENST00000574029 E9PMD0 336 aa23.12■■□□□ 1.29
VPS53-216ENST00000574029 I3L4J1 428 aa23.12■■□□□ 1.29
VPS53-216ENST00000574029 LMNAP02545 664 aaKnown RBP23.12■■□□□ 1.29
VPS53-216ENST00000574029 U2AF2P26368 475 aaKnown RBP eCLIP23.12■■□□□ 1.29
VPS53-216ENST00000574029 TOB1P50616 345 aaPredicted RBP23.12■■□□□ 1.29
VPS53-216ENST00000574029 PRKCQQ04759 706 aa23.12■■□□□ 1.29
VPS53-216ENST00000574029 PTGDRQ13258 359 aa23.12■■□□□ 1.29
VPS53-216ENST00000574029 SNW1Q13573 536 aaKnown RBP23.12■■□□□ 1.29
VPS53-216ENST00000574029 ZNF568Q3ZCX4 644 aa23.12■■□□□ 1.29
VPS53-216ENST00000574029 TAS1R3Q7RTX0 852 aa23.12■■□□□ 1.29
VPS53-216ENST00000574029 FAM184AQ8NB25 1140 aa23.12■■□□□ 1.29
VPS53-216ENST00000574029 ZSCAN31Q96LW9 406 aaPredicted RBP23.12■■□□□ 1.29
VPS53-216ENST00000574029 MRPL4Q9BYD3 311 aaKnown RBP23.12■■□□□ 1.29
VPS53-216ENST00000574029 RAB34Q9BZG1 259 aa23.12■■□□□ 1.29
VPS53-216ENST00000574029 SLC38A7Q9NVC3 462 aa23.12■■□□□ 1.29
VPS53-216ENST00000574029 ARHGAP28Q9P2N2 729 aa23.12■■□□□ 1.29
VPS53-216ENST00000574029 KANSL1LA0AUZ9 987 aa23.11■■□□□ 1.29
VPS53-216ENST00000574029 HIP1RO75146 1068 aa23.11■■□□□ 1.29
VPS53-216ENST00000574029 SP9P0CG40 484 aa23.11■■□□□ 1.29
VPS53-216ENST00000574029 DMP1Q13316 513 aaPredicted RBP23.11■■□□□ 1.29
VPS53-216ENST00000574029 MLF2Q15773 248 aaPredicted RBP23.11■■□□□ 1.29
VPS53-216ENST00000574029 SLC44A4Q53GD3 710 aa23.11■■□□□ 1.29
VPS53-216ENST00000574029 SLC8B1Q6J4K2 584 aa23.11■■□□□ 1.29
VPS53-216ENST00000574029 ZNF461Q8TAF7 563 aa23.11■■□□□ 1.29
VPS53-216ENST00000574029 ZMAT2Q96NC0 199 aaKnown RBP23.11■■□□□ 1.29
VPS53-216ENST00000574029 TARS2Q9BW92 718 aaKnown RBP23.11■■□□□ 1.29
VPS53-216ENST00000574029 AVENQ9NQS1 362 aaPredicted RBP23.11■■□□□ 1.29
VPS53-216ENST00000574029 DNM3Q9UQ16 869 aa23.11■■□□□ 1.29
VPS53-216ENST00000574029 PCDHB6Q9Y5E3 794 aa23.11■■□□□ 1.29
VPS53-216ENST00000574029 RIF1Q5UIP0 2472 aaKnown RBP23.1■■□□□ 1.29
VPS53-216ENST00000574029 ARHGEF37A1IGU5 675 aa23.1■■□□□ 1.29
VPS53-216ENST00000574029 ABLIM1O14639 778 aa23.1■■□□□ 1.29
VPS53-216ENST00000574029 LRRN2O75325 713 aa23.1■■□□□ 1.29
VPS53-216ENST00000574029 ABLIM3O94929 683 aa23.1■■□□□ 1.29
VPS53-216ENST00000574029 KCNE1P15382 129 aa23.1■■□□□ 1.29
VPS53-216ENST00000574029 PROZP22891 400 aa23.1■■□□□ 1.29
VPS53-216ENST00000574029 OSTNP61366 133 aa23.1■■□□□ 1.29
VPS53-216ENST00000574029 PFKPQ01813 784 aa23.1■■□□□ 1.29
VPS53-216ENST00000574029 ROR1Q01973 937 aa23.1■■□□□ 1.29
VPS53-216ENST00000574029 MAPK7Q13164 816 aa23.1■■□□□ 1.29
VPS53-216ENST00000574029 IL17AQ16552 155 aa23.1■■□□□ 1.29
VPS53-216ENST00000574029 KCNG4Q8TDN1 519 aa23.1■■□□□ 1.29
VPS53-216ENST00000574029 DRC1Q96MC2 740 aa23.1■■□□□ 1.29
VPS53-216ENST00000574029 KXD1Q9BQD3 176 aa23.1■■□□□ 1.29
VPS53-216ENST00000574029 SH2B1Q9NRF2 756 aaPredicted RBP23.1■■□□□ 1.29
VPS53-216ENST00000574029 MRPS23Q9Y3D9 190 aaKnown RBP23.1■■□□□ 1.29
VPS53-216ENST00000574029 RBM19Q9Y4C8 960 aaKnown RBP23.1■■□□□ 1.29
VPS53-216ENST00000574029 PATJQ8NI35 1801 aa23.1■■□□□ 1.29
VPS53-216ENST00000574029 CITO14578 2027 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 PDCD11Q14690 1871 aaKnown RBP23.09■■□□□ 1.29
VPS53-216ENST00000574029 PP2D1A8MPX8 630 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 LAD1O00515 517 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 PODXLO00592 558 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 TBC1D4O60343 1298 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 RHOP08100 348 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms