RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 PSAPP07602 524 aa24.35■■□□□ 1.49
VPS53-211ENST00000571805 ACTN3Q08043 901 aaPredicted RBP24.35■■□□□ 1.49
VPS53-211ENST00000571805 EPS8L3Q8TE67 593 aaKnown RBP24.35■■□□□ 1.49
VPS53-211ENST00000571805 SMIM23A6NLE4 172 aa24.35■■□□□ 1.49
VPS53-211ENST00000571805 DKC1O60832 514 aaKnown RBP eCLIP24.35■■□□□ 1.493e-11■■■□□ 15.6
VPS53-211ENST00000571805 DRP2Q13474 957 aa24.35■■□□□ 1.49
VPS53-211ENST00000571805 SGO2Q562F6 1265 aa24.35■■□□□ 1.49
VPS53-211ENST00000571805 CHADLQ6NUI6 762 aa24.35■■□□□ 1.49
VPS53-211ENST00000571805 CCDC60Q8IWA6 550 aaPredicted RBP24.35■■□□□ 1.49
VPS53-211ENST00000571805 ATXN2LQ8WWM7 1075 aaKnown RBP24.35■■□□□ 1.49
VPS53-211ENST00000571805 CHMP6Q96FZ7 201 aa24.35■■□□□ 1.49
VPS53-211ENST00000571805 ZNF317Q96PQ6 595 aaPredicted RBP24.35■■□□□ 1.49
VPS53-211ENST00000571805 PLVAPQ9BX97 442 aa24.35■■□□□ 1.49
VPS53-211ENST00000571805 CYP26B1Q9NR63 512 aa24.35■■□□□ 1.49
VPS53-211ENST00000571805 C1orf112Q9NSG2 853 aa24.35■■□□□ 1.49
VPS53-211ENST00000571805 ZNF280AP59817 542 aaPredicted RBP24.34■■□□□ 1.49
VPS53-211ENST00000571805 PPP1R7Q15435 360 aa24.34■■□□□ 1.49
VPS53-211ENST00000571805 CPA5Q8WXQ8 436 aa24.34■■□□□ 1.49
VPS53-211ENST00000571805 BICD1Q96G01 975 aa24.34■■□□□ 1.49
VPS53-211ENST00000571805 CABS1Q96KC9 395 aa24.34■■□□□ 1.49
VPS53-211ENST00000571805 FAM81BQ96LP2 452 aa24.34■■□□□ 1.49
VPS53-211ENST00000571805 HERPUD2Q9BSE4 406 aa24.34■■□□□ 1.49
VPS53-211ENST00000571805 OSBPL7Q9BZF2 842 aa24.34■■□□□ 1.49
VPS53-211ENST00000571805 AAASQ9NRG9 546 aa24.34■■□□□ 1.49
VPS53-211ENST00000571805 WHRNQ9P202 907 aa24.34■■□□□ 1.49
VPS53-211ENST00000571805 PCDHB2Q9Y5E7 798 aa24.34■■□□□ 1.49
VPS53-211ENST00000571805 EXTL3O43909 919 aa24.34■■□□□ 1.49
VPS53-211ENST00000571805 RRM1P23921 792 aa24.34■■□□□ 1.49
VPS53-211ENST00000571805 HNRNPH1P31943 449 aaKnown RBP24.34■■□□□ 1.49
VPS53-211ENST00000571805 KCNV1Q6PIU1 500 aa24.34■■□□□ 1.49
VPS53-211ENST00000571805 CPLX4Q7Z7G2 160 aa24.34■■□□□ 1.49
VPS53-211ENST00000571805 ZNF677Q86XU0 584 aa24.34■■□□□ 1.49
VPS53-211ENST00000571805 CACNA2D3Q8IZS8 1091 aa24.34■■□□□ 1.49
VPS53-211ENST00000571805 SEPT9Q9UHD8 586 aaPredicted RBP24.34■■□□□ 1.49
VPS53-211ENST00000571805 NFASCO94856 1347 aa24.33■■□□□ 1.49
VPS53-211ENST00000571805 WNT7BP56706 349 aa24.33■■□□□ 1.49
VPS53-211ENST00000571805 BACE1P56817 501 aa24.33■■□□□ 1.49
VPS53-211ENST00000571805 PRKCEQ02156 737 aa24.33■■□□□ 1.49
VPS53-211ENST00000571805 KRT17Q04695 432 aa24.33■■□□□ 1.49
VPS53-211ENST00000571805 CALCOCO2Q13137 446 aa24.33■■□□□ 1.49
VPS53-211ENST00000571805 AUHQ13825 339 aaKnown RBP24.33■■□□□ 1.49
VPS53-211ENST00000571805 LMBRD2Q68DH5 695 aaPredicted RBP24.33■■□□□ 1.49
VPS53-211ENST00000571805 RHBDF2Q6PJF5 856 aa24.33■■□□□ 1.49
VPS53-211ENST00000571805 ABHD15Q6UXT9 468 aa24.33■■□□□ 1.49
VPS53-211ENST00000571805 NSUN6Q8TEA1 469 aaKnown RBP24.33■■□□□ 1.49
VPS53-211ENST00000571805 POLR3FQ9H1D9 316 aaPredicted RBP24.33■■□□□ 1.49
VPS53-211ENST00000571805 ATP6V0A4Q9HBG4 840 aa24.33■■□□□ 1.49
VPS53-211ENST00000571805 JPH1Q9HDC5 661 aaPredicted RBP24.33■■□□□ 1.49
VPS53-211ENST00000571805 CHST7Q9NS84 486 aa24.33■■□□□ 1.49
VPS53-211ENST00000571805 VGLL3A8MV65 326 aa24.32■■□□□ 1.48
VPS53-211ENST00000571805 CYP1A1P04798 512 aaPredicted RBP24.32■■□□□ 1.48
VPS53-211ENST00000571805 MYBL1P10243 752 aa24.32■■□□□ 1.48
VPS53-211ENST00000571805 IVDP26440 423 aa24.32■■□□□ 1.48
VPS53-211ENST00000571805 SNX1Q13596 522 aa24.32■■□□□ 1.48
VPS53-211ENST00000571805 PSMD6Q15008 389 aa24.32■■□□□ 1.48
VPS53-211ENST00000571805 ZACNQ401N2 412 aa24.32■■□□□ 1.48
VPS53-211ENST00000571805 GKAP1Q5VSY0 366 aaPredicted RBP24.32■■□□□ 1.48
VPS53-211ENST00000571805 SNRNP48Q6IEG0 339 aaKnown RBP24.32■■□□□ 1.48
VPS53-211ENST00000571805 CCDC121Q6ZUS5 278 aa24.32■■□□□ 1.48
VPS53-211ENST00000571805 TRMT10CQ7L0Y3 403 aaKnown RBP24.32■■□□□ 1.48
VPS53-211ENST00000571805 SUGP1Q8IWZ8 645 aaKnown RBP24.32■■□□□ 1.48
VPS53-211ENST00000571805 IFT74Q96LB3 600 aa24.32■■□□□ 1.48
VPS53-211ENST00000571805 SELENOSQ9BQE4 189 aa24.32■■□□□ 1.48
VPS53-211ENST00000571805 SLC9A2Q9UBY0 812 aa24.32■■□□□ 1.48
VPS53-211ENST00000571805 RASGRF2O14827 1237 aa24.32■■□□□ 1.48
VPS53-211ENST00000571805 C4BPAP04003 597 aaKnown RBP24.32■■□□□ 1.48
VPS53-211ENST00000571805 SLC1A1P43005 524 aa24.32■■□□□ 1.48
VPS53-211ENST00000571805 ACTR2P61160 394 aa24.32■■□□□ 1.48
VPS53-211ENST00000571805 MKRN4PQ13434 485 aaPredicted RBP24.32■■□□□ 1.48
VPS53-211ENST00000571805 LLGL2Q6P1M3 1020 aa24.32■■□□□ 1.48
VPS53-211ENST00000571805 PHLDB2Q86SQ0 1253 aa24.32■■□□□ 1.48
VPS53-211ENST00000571805 DDX27Q96GQ7 796 aaKnown RBP24.32■■□□□ 1.48
VPS53-211ENST00000571805 KIAA1586Q9HCI6 787 aa24.32■■□□□ 1.48
VPS53-211ENST00000571805 SLCO1A2P46721 670 aa24.31■■□□□ 1.48
VPS53-211ENST00000571805 CENPCQ03188 943 aa24.31■■□□□ 1.48
VPS53-211ENST00000571805 MFSD5Q6N075 450 aa24.31■■□□□ 1.48
VPS53-211ENST00000571805 ZNF214Q9UL59 606 aaPredicted RBP24.31■■□□□ 1.48
VPS53-211ENST00000571805 ADAMTS5Q9UNA0 930 aa24.31■■□□□ 1.48
VPS53-211ENST00000571805 STYXL1Q9Y6J8 313 aa24.31■■□□□ 1.48
VPS53-211ENST00000571805 HLA-DRAP01903 254 aa24.31■■□□□ 1.48
VPS53-211ENST00000571805 ITIH2P19823 946 aa24.31■■□□□ 1.48
VPS53-211ENST00000571805 RXRBP28702 533 aa24.31■■□□□ 1.48
VPS53-211ENST00000571805 SP4Q02446 784 aa24.31■■□□□ 1.48
VPS53-211ENST00000571805 PLCB4Q15147 1175 aa24.31■■□□□ 1.48
VPS53-211ENST00000571805 SPRED3Q2MJR0 410 aa24.31■■□□□ 1.48
VPS53-211ENST00000571805 TDRD10Q5VZ19 366 aaKnown RBP24.31■■□□□ 1.48
VPS53-211ENST00000571805 CCDC25Q86WR0 208 aa24.31■■□□□ 1.48
VPS53-211ENST00000571805 CCDC13Q8IYE1 715 aa24.31■■□□□ 1.48
VPS53-211ENST00000571805 ATG4AQ8WYN0 398 aa24.31■■□□□ 1.48
VPS53-211ENST00000571805 TRIM11Q96F44 468 aa24.31■■□□□ 1.48
VPS53-211ENST00000571805 ROPN1BQ9BZX4 212 aaPredicted RBP24.31■■□□□ 1.48
VPS53-211ENST00000571805 CDC42EP4Q9H3Q1 356 aaKnown RBP24.31■■□□□ 1.48
VPS53-211ENST00000571805 ROPN1Q9HAT0 212 aaPredicted RBP24.31■■□□□ 1.48
VPS53-211ENST00000571805 ACO1P21399 889 aaKnown RBP24.3■■□□□ 1.48
VPS53-211ENST00000571805 LIG4P49917 911 aa24.3■■□□□ 1.48
VPS53-211ENST00000571805 BPIFB4P59827 614 aa24.3■■□□□ 1.48
VPS53-211ENST00000571805 C2CD6Q53TS8 623 aa24.3■■□□□ 1.48
VPS53-211ENST00000571805 NBPF12Q5TAG4 269 aaPredicted RBP24.3■■□□□ 1.48
VPS53-211ENST00000571805 ICE2Q659A1 982 aa24.3■■□□□ 1.48
VPS53-211ENST00000571805 MON1BQ7L1V2 547 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms