RNA–Protein interactions for RNA: ENST00000569827.5

CAPN3-220, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-220ENST00000569827 SLC44A4Q53GD3 710 aa13.31□□□□□ -0.28
CAPN3-220ENST00000569827 ZC3H14Q6PJT7 736 aaKnown RBP13.31□□□□□ -0.28
CAPN3-220ENST00000569827 CD300LGQ6UXG3 332 aa13.31□□□□□ -0.28
CAPN3-220ENST00000569827 TPRG1Q6ZUI0 275 aa13.31□□□□□ -0.28
CAPN3-220ENST00000569827 WASF1Q92558 559 aa13.31□□□□□ -0.28
CAPN3-220ENST00000569827 DDX27Q96GQ7 796 aaKnown RBP13.31□□□□□ -0.28
CAPN3-220ENST00000569827 PRIMPOLQ96LW4 560 aa13.31□□□□□ -0.28
CAPN3-220ENST00000569827 ACACBO00763 2458 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 FAM170BA6NMN3 283 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 EPB41L2O43491 1005 aaKnown RBP13.3□□□□□ -0.28
CAPN3-220ENST00000569827 XYLBO75191 536 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 B3GAT3O94766 335 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 ARPP19P56211 112 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 RAB33AQ14088 237 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 GRM2Q14416 872 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 ZNF174Q15697 407 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 ECM1Q16610 540 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 MAPK6Q16659 721 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 FAM187BQ17R55 369 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 NT5DC1Q5TFE4 455 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.3□□□□□ -0.28
CAPN3-220ENST00000569827 MTSS1LQ765P7 747 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 GPR65Q8IYL9 337 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 MCPH1Q8NEM0 835 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 DEPTORQ8TB45 409 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 RUBCNQ92622 972 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 TCEAL4Q96EI5 215 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 ADPGKQ9BRR6 497 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 DDX23Q9BUQ8 820 aaKnown RBP13.3□□□□□ -0.28
CAPN3-220ENST00000569827 BCO2Q9BYV7 579 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 LTB4R2Q9NPC1 389 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 HEBP1Q9NRV9 189 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 MTRRQ9UBK8 725 aa13.3□□□□□ -0.28
CAPN3-220ENST00000569827 MRPS23Q9Y3D9 190 aaKnown RBP13.3□□□□□ -0.28
CAPN3-220ENST00000569827 TSC2P49815 1807 aa13.29□□□□□ -0.28
CAPN3-220ENST00000569827 DENND4CQ5VZ89 1909 aa13.29□□□□□ -0.28
CAPN3-220ENST00000569827 ARHGEF35A5YM69 484 aa13.29□□□□□ -0.28
CAPN3-220ENST00000569827 ACKR2O00590 384 aa13.29□□□□□ -0.28
CAPN3-220ENST00000569827 LAMTOR5O43504 91 aa13.29□□□□□ -0.28
CAPN3-220ENST00000569827 KINO60870 393 aaKnown RBP13.29□□□□□ -0.28
CAPN3-220ENST00000569827 RHOP08100 348 aa13.29□□□□□ -0.28
CAPN3-220ENST00000569827 FGFR3P22607 806 aa13.29□□□□□ -0.28
CAPN3-220ENST00000569827 NBR1Q14596 966 aa13.29□□□□□ -0.28
CAPN3-220ENST00000569827 RSPO4Q2I0M5 234 aaPredicted RBP13.29□□□□□ -0.28
CAPN3-220ENST00000569827 TANGO2Q6ICL3 276 aa13.29□□□□□ -0.28
CAPN3-220ENST00000569827 SHDQ96IW2 340 aa13.29□□□□□ -0.28
CAPN3-220ENST00000569827 PPP1R10Q96QC0 940 aaKnown RBP13.29□□□□□ -0.28
CAPN3-220ENST00000569827 C2orf40Q9H1Z8 148 aa13.29□□□□□ -0.28
CAPN3-220ENST00000569827 SEMA4AQ9H3S1 761 aa13.29□□□□□ -0.28
CAPN3-220ENST00000569827 TUFT1Q9NNX1 390 aa13.29□□□□□ -0.28
CAPN3-220ENST00000569827 NCDNQ9UBB6 729 aa13.29□□□□□ -0.28
CAPN3-220ENST00000569827 NDRG2Q9UN36 371 aaKnown RBP13.29□□□□□ -0.28
CAPN3-220ENST00000569827 ZFP37Q9Y6Q3 630 aaPredicted RBP13.29□□□□□ -0.28
CAPN3-220ENST00000569827 NUP210Q8TEM1 1887 aaPredicted RBP13.29□□□□□ -0.28
CAPN3-220ENST00000569827 CNOT1A5YKK6 2376 aaKnown RBP13.29□□□□□ -0.28
CAPN3-220ENST00000569827 WDR27A2RRH5 827 aa13.28□□□□□ -0.28
CAPN3-220ENST00000569827 C1RP00736 705 aa13.28□□□□□ -0.28
CAPN3-220ENST00000569827 CYP11B2P19099 503 aa13.28□□□□□ -0.28
CAPN3-220ENST00000569827 HOXA9P31269 272 aa13.28□□□□□ -0.28
CAPN3-220ENST00000569827 ROR1Q01973 937 aa13.28□□□□□ -0.28
CAPN3-220ENST00000569827 ELAVL2Q12926 359 aaKnown RBP13.28□□□□□ -0.28
CAPN3-220ENST00000569827 LPAL2Q16609 132 aa13.28□□□□□ -0.28
CAPN3-220ENST00000569827 ATF7IP2Q5U623 682 aa13.28□□□□□ -0.28
CAPN3-220ENST00000569827 NACC1Q96RE7 527 aa13.28□□□□□ -0.28
CAPN3-220ENST00000569827 EML5Q05BV3 1969 aa13.28□□□□□ -0.28
CAPN3-220ENST00000569827 SCN1AP35498 2009 aa13.28□□□□□ -0.28
CAPN3-220ENST00000569827 CHD8Q9HCK8 2581 aa13.27□□□□□ -0.28
CAPN3-220ENST00000569827 OBSL1O75147 1896 aa13.27□□□□□ -0.28
CAPN3-220ENST00000569827 SHISA7A6NL88 538 aa13.27□□□□□ -0.29
CAPN3-220ENST00000569827 SEC24AO95486 1093 aa13.27□□□□□ -0.29
CAPN3-220ENST00000569827 OR52Z1P0C646 297 aa13.27□□□□□ -0.29
CAPN3-220ENST00000569827 HARSP12081 509 aaKnown RBP13.27□□□□□ -0.29
CAPN3-220ENST00000569827 XRCC6P12956 609 aaKnown RBP eCLIP13.27□□□□□ -0.29
CAPN3-220ENST00000569827 GJA1P17302 382 aa13.27□□□□□ -0.29
CAPN3-220ENST00000569827 CCR2P41597 374 aa13.27□□□□□ -0.29
CAPN3-220ENST00000569827 NAMPTP43490 491 aa13.27□□□□□ -0.29
CAPN3-220ENST00000569827 PRKCQQ04759 706 aa13.27□□□□□ -0.29
CAPN3-220ENST00000569827 TRIM29Q14134 588 aa13.27□□□□□ -0.29
CAPN3-220ENST00000569827 UPP1Q16831 310 aa13.27□□□□□ -0.29
CAPN3-220ENST00000569827 DCAF4L1Q3SXM0 396 aa13.27□□□□□ -0.29
CAPN3-220ENST00000569827 HS6ST3Q8IZP7 471 aa13.27□□□□□ -0.29
CAPN3-220ENST00000569827 ZMAT2Q96NC0 199 aaKnown RBP13.27□□□□□ -0.29
CAPN3-220ENST00000569827 CORO1BQ9BR76 489 aa13.27□□□□□ -0.29
CAPN3-220ENST00000569827 POLR3CQ9BUI4 534 aaPredicted RBP13.27□□□□□ -0.29
CAPN3-220ENST00000569827 CDT1Q9H211 546 aa13.27□□□□□ -0.29
CAPN3-220ENST00000569827 BHMT2Q9H2M3 363 aa13.27□□□□□ -0.29
CAPN3-220ENST00000569827 SMG5Q9UPR3 1016 aaKnown RBP13.27□□□□□ -0.29
CAPN3-220ENST00000569827 NCANO14594 1321 aa13.27□□□□□ -0.29
CAPN3-220ENST00000569827 SMIM28A0A1B0GU29 152 aa13.26□□□□□ -0.29
CAPN3-220ENST00000569827 PRRG1O14668 218 aa13.26□□□□□ -0.29
CAPN3-220ENST00000569827 MEFVO15553 781 aaPredicted RBP13.26□□□□□ -0.29
CAPN3-220ENST00000569827 LRG1P02750 347 aa13.26□□□□□ -0.29
CAPN3-220ENST00000569827 FCARP24071 287 aa13.26□□□□□ -0.29
CAPN3-220ENST00000569827 CCT6AP40227 531 aaKnown RBP13.26□□□□□ -0.29
CAPN3-220ENST00000569827 MTAPQ13126 283 aa13.26□□□□□ -0.29
CAPN3-220ENST00000569827 PUM1Q14671 1186 aaKnown RBP eCLIP13.26□□□□□ -0.29
CAPN3-220ENST00000569827 ZNF568Q3ZCX4 644 aa13.26□□□□□ -0.29
CAPN3-220ENST00000569827 SEZ6Q53EL9 994 aa13.26□□□□□ -0.29
CAPN3-220ENST00000569827 VARS2Q5ST30 1063 aaKnown RBP13.26□□□□□ -0.29
CAPN3-220ENST00000569827 ZBTB41Q5SVQ8 909 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms