RNA–Protein interactions for RNA: ENST00000568883.5

PKM-222, Transcript of pyruvate kinase M1/2, human

TSL 5 BASIC

Gene PKM, Length 1,863 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PKM-222	ENST00000568883	SMCHD1	A6NHR9	2005 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	COL4A5	P29400	1685 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	RASGRF2	O14827	1237 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	RIPK2	O43353	540 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	LDHA	P00338	332 aa	Known RBP	13.54	□□□□□ -0.24
PKM-222	ENST00000568883	UNG	P13051	313 aa	Predicted RBP	13.54	□□□□□ -0.24
PKM-222	ENST00000568883	KCNA2	P16389	499 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	CETN2	P41208	172 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	MMP13	P45452	471 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	BACE1	P56817	501 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	CLDN10	P78369	228 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	CENPC	Q03188	943 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	EN1	Q05925	392 aa	Predicted RBP	13.54	□□□□□ -0.24
PKM-222	ENST00000568883	IFT88	Q13099	833 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	MFSD5	Q6N075	450 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	SLC39A4	Q6P5W5	647 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	MCOLN2	Q8IZK6	566 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	CNPY4	Q8N129	248 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	ANKS4B	Q8N8V4	417 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	PSPC1	Q8WXF1	523 aa	Known RBP	13.54	□□□□□ -0.24
PKM-222	ENST00000568883	BSND	Q8WZ55	320 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	TATDN2	Q93075	761 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	RNF25	Q96BH1	459 aa	Predicted RBP	13.54	□□□□□ -0.24
PKM-222	ENST00000568883	ATG4C	Q96DT6	458 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	POP1	Q99575	1024 aa	Known RBP	13.54	□□□□□ -0.24
PKM-222	ENST00000568883	NSRP1	Q9H0G5	558 aa	Known RBP	13.54	□□□□□ -0.24
PKM-222	ENST00000568883	PICK1	Q9NRD5	415 aa		13.54	□□□□□ -0.24
PKM-222	ENST00000568883	TOPORS	Q9NS56	1045 aa	Predicted RBP	13.54	□□□□□ -0.24
PKM-222	ENST00000568883	DDX20	Q9UHI6	824 aa	Known RBP	13.54	□□□□□ -0.24
PKM-222	ENST00000568883	TNS1	Q9HBL0	1735 aa	Known RBP	13.54	□□□□□ -0.24
PKM-222	ENST00000568883	TLDC2	A0PJX2	215 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	GRIN3B	O60391	1043 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	PRKCE	Q02156	737 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	SIX1	Q15475	284 aa	Predicted RBP	13.53	□□□□□ -0.24
PKM-222	ENST00000568883	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.53	□□□□□ -0.24
PKM-222	ENST00000568883	SNRNP48	Q6IEG0	339 aa	Known RBP	13.53	□□□□□ -0.24
PKM-222	ENST00000568883	SWSAP1	Q6NVH7	229 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	C15orf39	Q6ZRI6	1047 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	SUGP1	Q8IWZ8	645 aa	Known RBP	13.53	□□□□□ -0.24
PKM-222	ENST00000568883	SCYL3	Q8IZE3	742 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	13.53	□□□□□ -0.24
PKM-222	ENST00000568883	SNF8	Q96H20	258 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	SEC16B	Q96JE7	1060 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	VCPIP1	Q96JH7	1222 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	SELENOS	Q9BQE4	189 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	POLR3F	Q9H1D9	316 aa	Predicted RBP	13.53	□□□□□ -0.24
PKM-222	ENST00000568883	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	13.53	□□□□□ -0.24	1e-6	■■■■■ 39.5
PKM-222	ENST00000568883	PDLIM7	Q9NR12	457 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	PTPN22	Q9Y2R2	807 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	SCIN	Q9Y6U3	715 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	FAM170A	A1A519	330 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	CLDN3	O15551	220 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	PSTPIP1	O43586	416 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	ZNF862	O60290	1169 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	SHBG	P04278	402 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	TNNI1	P19237	187 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	TBXAS1	P24557	533 aa	Predicted RBP	13.53	□□□□□ -0.24
PKM-222	ENST00000568883	PIK3CA	P42336	1068 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	POLG	P54098	1239 aa	Predicted RBP	13.53	□□□□□ -0.24
PKM-222	ENST00000568883	KRT17	Q04695	432 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	ACTN3	Q08043	901 aa	Predicted RBP	13.53	□□□□□ -0.24
PKM-222	ENST00000568883	PTK6	Q13882	451 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	ZACN	Q401N2	412 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	SMYD5	Q6GMV2	418 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	ZNF280C	Q8ND82	737 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	BTBD6	Q96KE9	485 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	C12orf42	Q96LP6	360 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	SEMA4A	Q9H3S1	761 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	AZI2	Q9H6S1	392 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	ACP6	Q9NPH0	428 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	ASIC3	Q9UHC3	531 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	CHORDC1	Q9UHD1	332 aa	Predicted RBP	13.53	□□□□□ -0.24
PKM-222	ENST00000568883	STYXL1	Q9Y6J8	313 aa		13.53	□□□□□ -0.24
PKM-222	ENST00000568883	DCDC2C	A8MYV0	355 aa		13.52	□□□□□ -0.25
PKM-222	ENST00000568883	C19orf81	C9J6K1	198 aa		13.52	□□□□□ -0.25
PKM-222	ENST00000568883	ATP2A1	O14983	1001 aa		13.52	□□□□□ -0.25
PKM-222	ENST00000568883	STBD1	O95210	358 aa		13.52	□□□□□ -0.25
PKM-222	ENST00000568883	PIGR	P01833	764 aa		13.52	□□□□□ -0.25
PKM-222	ENST00000568883	CHN1	P15882	459 aa		13.52	□□□□□ -0.25
PKM-222	ENST00000568883	KCNA3	P22001	575 aa		13.52	□□□□□ -0.25
PKM-222	ENST00000568883	ACTR2	P61160	394 aa		13.52	□□□□□ -0.25
PKM-222	ENST00000568883	ZDHHC14	Q8IZN3	488 aa		13.52	□□□□□ -0.25
PKM-222	ENST00000568883	SERPINB12	Q96P63	405 aa		13.52	□□□□□ -0.25
PKM-222	ENST00000568883	CAMKK2	Q96RR4	588 aa		13.52	□□□□□ -0.25
PKM-222	ENST00000568883	CCDC134	Q9H6E4	229 aa		13.52	□□□□□ -0.25
PKM-222	ENST00000568883	ACAD9	Q9H845	621 aa		13.52	□□□□□ -0.25
PKM-222	ENST00000568883	INTS9	Q9NV88	658 aa	Known RBP	13.52	□□□□□ -0.25
PKM-222	ENST00000568883	AGO2	Q9UKV8	859 aa	Known RBP	13.52	□□□□□ -0.25
PKM-222	ENST00000568883	TCRBV7S2A1N4T	A0A589	114 aa		13.51	□□□□□ -0.25
PKM-222	ENST00000568883	ASAP2	O43150	1006 aa		13.51	□□□□□ -0.25
PKM-222	ENST00000568883	PROSC	O94903	275 aa		13.51	□□□□□ -0.25
PKM-222	ENST00000568883	HLA-DRA	P01903	254 aa		13.51	□□□□□ -0.25
PKM-222	ENST00000568883	CYP1A1	P04798	512 aa	Predicted RBP	13.51	□□□□□ -0.25
PKM-222	ENST00000568883	SUPT20HL2	P0C7V6	817 aa		13.51	□□□□□ -0.25
PKM-222	ENST00000568883	ATF2	P15336	505 aa		13.51	□□□□□ -0.25
PKM-222	ENST00000568883	FGFR4	P22455	802 aa		13.51	□□□□□ -0.25
PKM-222	ENST00000568883	DSG3	P32926	999 aa		13.51	□□□□□ -0.25
PKM-222	ENST00000568883	NAMPT	P43490	491 aa		13.51	□□□□□ -0.25
PKM-222	ENST00000568883	LMNB2	Q03252	620 aa		13.51	□□□□□ -0.25
PKM-222	ENST00000568883	EMC2	Q15006	297 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms