RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 PTGDRQ13258 359 aa13.09□□□□□ -0.31
CLK3-222ENST00000568232 PRSS36Q5K4E3 855 aa13.09□□□□□ -0.31
CLK3-222ENST00000568232 VITQ6UXI7 678 aa13.09□□□□□ -0.31
CLK3-222ENST00000568232 FERMT3Q86UX7 667 aa13.09□□□□□ -0.31
CLK3-222ENST00000568232 CEP170P1Q96L14 293 aa13.09□□□□□ -0.31
CLK3-222ENST00000568232 CXCL16Q9H2A7 254 aa13.09□□□□□ -0.31
CLK3-222ENST00000568232 WRAP73Q9P2S5 460 aaPredicted RBP13.09□□□□□ -0.31
CLK3-222ENST00000568232 LOC400499M0QZD8 3231 aa13.09□□□□□ -0.31
CLK3-222ENST00000568232 RALGAPA1Q6GYQ0 2036 aa13.08□□□□□ -0.31
CLK3-222ENST00000568232 COL4A2P08572 1712 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 TDRD15B5MCY1 1934 aaKnown RBP13.08□□□□□ -0.32
CLK3-222ENST00000568232 INO80B-WBP1J3KQ70 363 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 B4GALT5O43286 388 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 NPTXRO95502 500 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 TDP2O95551 362 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 PTPN2P17706 415 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 ARF4P18085 180 aaPredicted RBP13.08□□□□□ -0.32
CLK3-222ENST00000568232 AXLP30530 894 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 CCR2P41597 374 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 SOX9P48436 509 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 PXNP49023 591 aaPredicted RBP13.08□□□□□ -0.32
CLK3-222ENST00000568232 NOVA1P51513 510 aaKnown RBP13.08□□□□□ -0.32
CLK3-222ENST00000568232 USP11P51784 963 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 TUSC3Q13454 348 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 CREB3L3Q68CJ9 461 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 TCEAL6Q6IPX3 200 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 KBTBD6Q86V97 674 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 WDR5BQ86VZ2 330 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 TCEAL3Q969E4 200 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 CCDC51Q96ER9 411 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 ASB16Q96NS5 453 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 CORO1BQ9BR76 489 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 ADAM33Q9BZ11 813 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 LSG1Q9H089 658 aaKnown RBP13.08□□□□□ -0.32
CLK3-222ENST00000568232 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.08□□□□□ -0.32
CLK3-222ENST00000568232 CDY1Q9Y6F8 540 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 NCANO14594 1321 aa13.08□□□□□ -0.32
CLK3-222ENST00000568232 SMG1Q96Q15 3661 aaKnown RBP13.08□□□□□ -0.32
CLK3-222ENST00000568232 KLF18A0A0U1RQI7 1052 aa13.07□□□□□ -0.32
CLK3-222ENST00000568232 ZBTB39O15060 712 aa13.07□□□□□ -0.32
CLK3-222ENST00000568232 EPN2O95208 641 aa13.07□□□□□ -0.32
CLK3-222ENST00000568232 PAPSS2O95340 614 aaPredicted RBP13.07□□□□□ -0.32
CLK3-222ENST00000568232 ZIC2O95409 532 aaPredicted RBP13.07□□□□□ -0.32
CLK3-222ENST00000568232 PSMC3P17980 439 aa13.07□□□□□ -0.32
CLK3-222ENST00000568232 GNA11P29992 359 aa13.07□□□□□ -0.32
CLK3-222ENST00000568232 RAP1GAPP47736 663 aa13.07□□□□□ -0.32
CLK3-222ENST00000568232 PTENP60484 403 aa13.07□□□□□ -0.32
CLK3-222ENST00000568232 AMHR2Q16671 573 aa13.07□□□□□ -0.32
CLK3-222ENST00000568232 Q4G0T1 1027 aa13.07□□□□□ -0.32
CLK3-222ENST00000568232 PLA2G2CQ5R387 149 aa13.07□□□□□ -0.32
CLK3-222ENST00000568232 RNF43Q68DV7 783 aa13.07□□□□□ -0.32
CLK3-222ENST00000568232 HACE1Q8IYU2 909 aa13.07□□□□□ -0.32
CLK3-222ENST00000568232 GATA6Q92908 595 aa13.07□□□□□ -0.32
CLK3-222ENST00000568232 TRPV5Q9NQA5 729 aa13.07□□□□□ -0.32
CLK3-222ENST00000568232 AVENQ9NQS1 362 aaPredicted RBP13.07□□□□□ -0.32
CLK3-222ENST00000568232 NAP1L2Q9ULW6 460 aaPredicted RBP13.07□□□□□ -0.32
CLK3-222ENST00000568232 WDR27A2RRH5 827 aa13.06□□□□□ -0.32
CLK3-222ENST00000568232 SLC38A8A6NNN8 435 aa13.06□□□□□ -0.32
CLK3-222ENST00000568232 ARNTLO00327 626 aa13.06□□□□□ -0.32
CLK3-222ENST00000568232 PTGESO14684 152 aa13.06□□□□□ -0.32
CLK3-222ENST00000568232 RIOK3O14730 519 aaKnown RBP13.06□□□□□ -0.32
CLK3-222ENST00000568232 ZNF263O14978 683 aa13.06□□□□□ -0.32
CLK3-222ENST00000568232 ASAP2O43150 1006 aa13.06□□□□□ -0.32
CLK3-222ENST00000568232 QARSP47897 775 aaKnown RBP13.06□□□□□ -0.32
CLK3-222ENST00000568232 EXOSC10Q01780 885 aaKnown RBP13.06□□□□□ -0.32
CLK3-222ENST00000568232 MBTD1Q05BQ5 628 aa13.06□□□□□ -0.32
CLK3-222ENST00000568232 NCBP1Q09161 790 aaKnown RBP13.06□□□□□ -0.32
CLK3-222ENST00000568232 ZNF252P-AS1Q0IIN9 211 aa13.06□□□□□ -0.32
CLK3-222ENST00000568232 EMC2Q15006 297 aa13.06□□□□□ -0.32
CLK3-222ENST00000568232 NECTIN1Q15223 517 aa13.06□□□□□ -0.32
CLK3-222ENST00000568232 TXNDC11Q6PKC3 985 aa13.06□□□□□ -0.32
CLK3-222ENST00000568232 EFCAB3Q8N7B9 438 aa13.06□□□□□ -0.32
CLK3-222ENST00000568232 TTC8Q8TAM2 541 aa13.06□□□□□ -0.32
CLK3-222ENST00000568232 ETNPPLQ8TBG4 499 aa13.06□□□□□ -0.32
CLK3-222ENST00000568232 TBCKQ8TEA7 893 aa13.06□□□□□ -0.32
CLK3-222ENST00000568232 CCDC12Q8WUD4 166 aaPredicted RBP13.06□□□□□ -0.32
CLK3-222ENST00000568232 MTRRQ9UBK8 725 aa13.06□□□□□ -0.32
CLK3-222ENST00000568232 TICRRQ7Z2Z1 1910 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 F5P12259 2224 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 C4orf47A7E2U8 309 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 EXTL3O43909 919 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 RPP40O75818 363 aaKnown RBP13.05□□□□□ -0.32
CLK3-222ENST00000568232 LRG1P02750 347 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 GJA1P17302 382 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 FGFR3P22607 806 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 MPLP40238 635 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 RFC5P40937 340 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 LRRC32Q14392 662 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 NAB2Q15742 525 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 PDXDC1Q6P996 788 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 SLC27A1Q6PCB7 646 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 CACNA2D4Q7Z3S7 1137 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 HS6ST3Q8IZP7 471 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 TCP11Q8WWU5 503 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 GAB3Q8WWW8 586 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 ZCCHC14Q8WYQ9 949 aaKnown RBP13.05□□□□□ -0.32
CLK3-222ENST00000568232 SMARCD2Q92925 531 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 LOXL4Q96JB6 756 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 SCNM1Q9BWG6 230 aa13.05□□□□□ -0.32
CLK3-222ENST00000568232 FREM2Q5SZK8 3169 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms