RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 GJB2P29033 226 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 HOXA9P31269 272 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 OR1D2P34982 312 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 OSTNP61366 133 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 RAB33AQ14088 237 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 ZRSR1Q15695 479 aaKnown RBP17.63■□□□□ 0.41
CLN3-229ENST00000567963 PPM1LQ5SGD2 360 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 LIN9Q5TKA1 542 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 GRASPQ7Z6J2 395 aaPredicted RBP17.63■□□□□ 0.41
CLN3-229ENST00000567963 SIX5Q8N196 739 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 KCTD17Q8N5Z5 321 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 C3orf58Q8NDZ4 430 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 VPS13AQ96RL7 3174 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 ABLIM1O14639 778 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 SLC16A4O15374 487 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 TRAPPC3O43617 180 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 CD2BP2O95400 341 aaKnown RBP17.63■□□□□ 0.41
CLN3-229ENST00000567963 CFHP08603 1231 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 FSHRP23945 695 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 SOX4Q06945 474 aaPredicted RBP17.63■□□□□ 0.41
CLN3-229ENST00000567963 UVSSAQ2YD98 709 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 SYT2Q8N9I0 419 aaPredicted RBP17.63■□□□□ 0.41
CLN3-229ENST00000567963 ZMAT2Q96NC0 199 aaKnown RBP17.63■□□□□ 0.41
CLN3-229ENST00000567963 ACAP3Q96P50 834 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 PNMA5Q96PV4 448 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 TCHPQ9BT92 498 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 SLC38A7Q9NVC3 462 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 MTRRQ9UBK8 725 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 KCNG1Q9UIX4 513 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 ZFP37Q9Y6Q3 630 aaPredicted RBP17.63■□□□□ 0.41
CLN3-229ENST00000567963 VWA3AA6NCI4 1184 aa17.62■□□□□ 0.41
CLN3-229ENST00000567963 ANHXE9PGG2 379 aa17.62■□□□□ 0.41
CLN3-229ENST00000567963 H3BQV1 296 aa17.62■□□□□ 0.41
CLN3-229ENST00000567963 MCF2P10911 925 aa17.62■□□□□ 0.41
CLN3-229ENST00000567963 SRFP11831 508 aa17.62■□□□□ 0.41
CLN3-229ENST00000567963 TKTP29401 623 aaKnown RBP17.62■□□□□ 0.41
CLN3-229ENST00000567963 BRCC3P46736 316 aa17.62■□□□□ 0.41
CLN3-229ENST00000567963 RAD51AP2Q09MP3 1159 aa17.62■□□□□ 0.41
CLN3-229ENST00000567963 AXDND1Q5T1B0 1012 aaPredicted RBP17.62■□□□□ 0.41
CLN3-229ENST00000567963 ARL6IP4Q66PJ3 421 aaKnown RBP17.62■□□□□ 0.41
CLN3-229ENST00000567963 MPZL3Q6UWV2 235 aa17.62■□□□□ 0.41
CLN3-229ENST00000567963 RSPO2Q6UXX9 243 aaPredicted RBP17.62■□□□□ 0.41
CLN3-229ENST00000567963 SPIRE2Q8WWL2 714 aa17.62■□□□□ 0.41
CLN3-229ENST00000567963 DDX27Q96GQ7 796 aaKnown RBP17.62■□□□□ 0.41
CLN3-229ENST00000567963 RTP3Q9BQQ7 232 aa17.62■□□□□ 0.41
CLN3-229ENST00000567963 BACE2Q9Y5Z0 518 aa17.62■□□□□ 0.41
CLN3-229ENST00000567963 CDY1Q9Y6F8 540 aa17.62■□□□□ 0.41
CLN3-229ENST00000567963 MYH11P35749 1972 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 KRBA1A5PL33 1030 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 CCL16O15467 120 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 PLS3P13797 630 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 KCNE1P15382 129 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 SLC12A3P55017 1021 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 NTHL1P78549 312 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 HTR4Q13639 388 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 ANKS3Q6ZW76 656 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 RTL10Q7L3V2 364 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 TMEM161BQ8NDZ6 487 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 SLC7A14Q8TBB6 771 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 ZBTB45Q96K62 511 aaPredicted RBP17.61■□□□□ 0.41
CLN3-229ENST00000567963 SNX27Q96L92 541 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 PLIN2Q99541 437 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 CNTN3Q9P232 1028 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 POLIQ9UNA4 740 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 CITO14578 2027 aa17.61■□□□□ 0.41
CLN3-229ENST00000567963 PROB1E7EW31 1015 aa17.6■□□□□ 0.41
CLN3-229ENST00000567963 I3L4J1 428 aa17.6■□□□□ 0.41
CLN3-229ENST00000567963 XYLBO75191 536 aa17.6■□□□□ 0.41
CLN3-229ENST00000567963 TOM1L1O75674 476 aa17.6■□□□□ 0.41
CLN3-229ENST00000567963 POU2F2P09086 479 aa17.6■□□□□ 0.41
CLN3-229ENST00000567963 SMTNP53814 917 aa17.6■□□□□ 0.41
CLN3-229ENST00000567963 STRN3Q13033 797 aa17.6■□□□□ 0.41
CLN3-229ENST00000567963 ST13P5Q8NFI4 369 aaPredicted RBP17.6■□□□□ 0.41
CLN3-229ENST00000567963 KCND2Q9NZV8 630 aa17.6■□□□□ 0.41
CLN3-229ENST00000567963 CDH7Q9ULB5 785 aa17.6■□□□□ 0.41
CLN3-229ENST00000567963 NUMBLQ9Y6R0 609 aa17.6■□□□□ 0.41
CLN3-229ENST00000567963 CFAP54Q96N23 3096 aa17.6■□□□□ 0.41
CLN3-229ENST00000567963 PODXLO00592 558 aa17.59■□□□□ 0.41
CLN3-229ENST00000567963 MEFVO15553 781 aaPredicted RBP17.59■□□□□ 0.41
CLN3-229ENST00000567963 GFRA3O60609 400 aa17.59■□□□□ 0.41
CLN3-229ENST00000567963 PLA2G4BP0C869 781 aa17.59■□□□□ 0.41
CLN3-229ENST00000567963 GPR152Q8TDT2 470 aa17.59■□□□□ 0.41
CLN3-229ENST00000567963 FGF13Q92913 245 aa17.59■□□□□ 0.41
CLN3-229ENST00000567963 FGF14Q92915 247 aa17.59■□□□□ 0.41
CLN3-229ENST00000567963 CDK5RAP3Q96JB5 506 aa17.59■□□□□ 0.41
CLN3-229ENST00000567963 RPP25Q9BUL9 199 aaKnown RBP17.59■□□□□ 0.41
CLN3-229ENST00000567963 CA14Q9ULX7 337 aa17.59■□□□□ 0.41
CLN3-229ENST00000567963 STK25O00506 426 aa17.58■□□□□ 0.41
CLN3-229ENST00000567963 MAPTP10636 758 aaKnown RBP17.58■□□□□ 0.41
CLN3-229ENST00000567963 HARSP12081 509 aaKnown RBP17.58■□□□□ 0.41
CLN3-229ENST00000567963 RPL9P32969 192 aaKnown RBP17.58■□□□□ 0.41
CLN3-229ENST00000567963 NBL1P41271 181 aa17.58■□□□□ 0.41
CLN3-229ENST00000567963 MCM2P49736 904 aa17.58■□□□□ 0.41
CLN3-229ENST00000567963 SLC10A6Q3KNW5 377 aa17.58■□□□□ 0.41
CLN3-229ENST00000567963 TMEM119Q4V9L6 283 aa17.58■□□□□ 0.41
CLN3-229ENST00000567963 ARSHQ5FYA8 562 aa17.58■□□□□ 0.41
CLN3-229ENST00000567963 SLC8B1Q6J4K2 584 aa17.58■□□□□ 0.41
CLN3-229ENST00000567963 PARM1Q6UWI2 310 aa17.58■□□□□ 0.41
CLN3-229ENST00000567963 CCDC105Q8IYK2 499 aa17.58■□□□□ 0.41
CLN3-229ENST00000567963 ZNF461Q8TAF7 563 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms