RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CCDC149Q6ZUS6 474 aa22.67■■□□□ 1.22
CLN3-219ENST00000565778 ZDHHC14Q8IZN3 488 aa22.67■■□□□ 1.22
CLN3-219ENST00000565778 KREMEN2Q8NCW0 462 aa22.67■■□□□ 1.22
CLN3-219ENST00000565778 PBXIP1Q96AQ6 731 aa22.67■■□□□ 1.22
CLN3-219ENST00000565778 SNX27Q96L92 541 aa22.67■■□□□ 1.22
CLN3-219ENST00000565778 ZMAT2Q96NC0 199 aaKnown RBP22.67■■□□□ 1.22
CLN3-219ENST00000565778 CLIC6Q96NY7 704 aa22.67■■□□□ 1.22
CLN3-219ENST00000565778 CLSTN3Q9BQT9 956 aa22.67■■□□□ 1.22
CLN3-219ENST00000565778 PIDD1Q9HB75 910 aa22.67■■□□□ 1.22
CLN3-219ENST00000565778 PARVGQ9HBI0 331 aa22.67■■□□□ 1.22
CLN3-219ENST00000565778 FBXO2Q9UK22 296 aaPredicted RBP22.67■■□□□ 1.22
CLN3-219ENST00000565778 TMEM189-UBE2V1I3L0A0 370 aa22.66■■□□□ 1.22
CLN3-219ENST00000565778 TRAK2O60296 914 aa22.66■■□□□ 1.22
CLN3-219ENST00000565778 TBCAO75347 108 aaKnown RBP22.66■■□□□ 1.22
CLN3-219ENST00000565778 KCNE1P15382 129 aa22.66■■□□□ 1.22
CLN3-219ENST00000565778 LIG4P49917 911 aa22.66■■□□□ 1.22
CLN3-219ENST00000565778 SOX4Q06945 474 aaPredicted RBP22.66■■□□□ 1.22
CLN3-219ENST00000565778 MCL1Q07820 350 aa22.66■■□□□ 1.22
CLN3-219ENST00000565778 SIGLEC14Q08ET2 396 aa22.66■■□□□ 1.22
CLN3-219ENST00000565778 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.66■■□□□ 1.22
CLN3-219ENST00000565778 OTOP3Q7RTS5 596 aa22.66■■□□□ 1.22
CLN3-219ENST00000565778 SMG7Q92540 1137 aaKnown RBP22.66■■□□□ 1.22
CLN3-219ENST00000565778 TBX20Q9UMR3 447 aa22.66■■□□□ 1.22
CLN3-219ENST00000565778 K7ENM7 598 aa22.65■■□□□ 1.22
CLN3-219ENST00000565778 TXLNAP40222 546 aa22.65■■□□□ 1.22
CLN3-219ENST00000565778 SLC10A6Q3KNW5 377 aa22.65■■□□□ 1.22
CLN3-219ENST00000565778 RRAGBQ5VZM2 374 aa22.65■■□□□ 1.22
CLN3-219ENST00000565778 KRI1Q8N9T8 703 aaKnown RBP22.65■■□□□ 1.22
CLN3-219ENST00000565778 USP28Q96RU2 1077 aa22.65■■□□□ 1.22
CLN3-219ENST00000565778 CNTN3Q9P232 1028 aa22.65■■□□□ 1.22
CLN3-219ENST00000565778 ARIH1Q9Y4X5 557 aaPredicted RBP22.65■■□□□ 1.22
CLN3-219ENST00000565778 I3L4J1 428 aa22.64■■□□□ 1.21
CLN3-219ENST00000565778 PODXLO00592 558 aa22.64■■□□□ 1.21
CLN3-219ENST00000565778 SCP2P22307 547 aa22.64■■□□□ 1.21
CLN3-219ENST00000565778 FGFR3P22607 806 aa22.64■■□□□ 1.21
CLN3-219ENST00000565778 BRCC3P46736 316 aa22.64■■□□□ 1.21
CLN3-219ENST00000565778 ZNF131P52739 623 aa22.64■■□□□ 1.21
CLN3-219ENST00000565778 CD300LGQ6UXG3 332 aa22.64■■□□□ 1.21
CLN3-219ENST00000565778 BMP8AQ7Z5Y6 402 aa22.64■■□□□ 1.21
CLN3-219ENST00000565778 SNX21Q969T3 373 aa22.64■■□□□ 1.21
CLN3-219ENST00000565778 C18orf25Q96B23 403 aaPredicted RBP22.64■■□□□ 1.21
CLN3-219ENST00000565778 FAM122AQ96E09 287 aa22.64■■□□□ 1.21
CLN3-219ENST00000565778 ZDHHC7Q9NXF8 308 aa22.64■■□□□ 1.21
CLN3-219ENST00000565778 SORCS3Q9UPU3 1222 aa22.64■■□□□ 1.21
CLN3-219ENST00000565778 ZMYND10O75800 440 aa22.63■■□□□ 1.21
CLN3-219ENST00000565778 ASGR2P07307 311 aa22.63■■□□□ 1.21
CLN3-219ENST00000565778 CLTAP09496 248 aa22.63■■□□□ 1.21
CLN3-219ENST00000565778 RPL9P32969 192 aaKnown RBP22.63■■□□□ 1.21
CLN3-219ENST00000565778 OR1D2P34982 312 aa22.63■■□□□ 1.21
CLN3-219ENST00000565778 MTMR3Q13615 1198 aa22.63■■□□□ 1.21
CLN3-219ENST00000565778 SLC39A14Q15043 492 aa22.63■■□□□ 1.21
CLN3-219ENST00000565778 DYMQ7RTS9 669 aa22.63■■□□□ 1.21
CLN3-219ENST00000565778 C3orf58Q8NDZ4 430 aa22.63■■□□□ 1.21
CLN3-219ENST00000565778 STAMQ92783 540 aa22.63■■□□□ 1.21
CLN3-219ENST00000565778 PANK2Q9BZ23 570 aa22.63■■□□□ 1.21
CLN3-219ENST00000565778 PRKD2Q9BZL6 878 aa22.63■■□□□ 1.21
CLN3-219ENST00000565778 HAPLN2Q9GZV7 340 aa22.63■■□□□ 1.21
CLN3-219ENST00000565778 WDR6Q9NNW5 1121 aaKnown RBP22.63■■□□□ 1.21
CLN3-219ENST00000565778 STK17AQ9UEE5 414 aa22.63■■□□□ 1.21
CLN3-219ENST00000565778 NUB1Q9Y5A7 615 aa22.63■■□□□ 1.21
CLN3-219ENST00000565778 HNRNPDLO14979 420 aaKnown RBP22.62■■□□□ 1.21
CLN3-219ENST00000565778 ADAM12O43184 909 aa22.62■■□□□ 1.21
CLN3-219ENST00000565778 HSP90AA1P07900 732 aaKnown RBP22.62■■□□□ 1.21
CLN3-219ENST00000565778 TKTP29401 623 aaKnown RBP22.62■■□□□ 1.21
CLN3-219ENST00000565778 NMT1P30419 496 aaKnown RBP22.62■■□□□ 1.21
CLN3-219ENST00000565778 GBP2P32456 591 aaPredicted RBP22.62■■□□□ 1.21
CLN3-219ENST00000565778 ANKS3Q6ZW76 656 aa22.62■■□□□ 1.21
CLN3-219ENST00000565778 SV2BQ7L1I2 683 aa22.62■■□□□ 1.21
CLN3-219ENST00000565778 UBALD2Q8IYN6 164 aa22.62■■□□□ 1.21
CLN3-219ENST00000565778 KCNN1Q92952 543 aa22.62■■□□□ 1.21
CLN3-219ENST00000565778 ZNF707Q96C28 371 aaPredicted RBP22.62■■□□□ 1.21
CLN3-219ENST00000565778 RHOBTB2Q9BYZ6 727 aa22.62■■□□□ 1.21
CLN3-219ENST00000565778 PLEKHA5Q9HAU0 1116 aa22.62■■□□□ 1.21
CLN3-219ENST00000565778 MEFVO15553 781 aaPredicted RBP22.61■■□□□ 1.21
CLN3-219ENST00000565778 CXCL8P10145 99 aa22.61■■□□□ 1.21
CLN3-219ENST00000565778 ABCD1P33897 745 aa22.61■■□□□ 1.21
CLN3-219ENST00000565778 RAB33AQ14088 237 aa22.61■■□□□ 1.21
CLN3-219ENST00000565778 KYAT1Q16773 422 aa22.61■■□□□ 1.21
CLN3-219ENST00000565778 PPM1LQ5SGD2 360 aa22.61■■□□□ 1.21
CLN3-219ENST00000565778 LIN9Q5TKA1 542 aa22.61■■□□□ 1.21
CLN3-219ENST00000565778 HSCBQ8IWL3 235 aa22.61■■□□□ 1.21
CLN3-219ENST00000565778 TFIP11Q9UBB9 837 aaKnown RBP22.61■■□□□ 1.21
CLN3-219ENST00000565778 MTRRQ9UBK8 725 aa22.61■■□□□ 1.21
CLN3-219ENST00000565778 FBXW11Q9UKB1 542 aa22.61■■□□□ 1.21
CLN3-219ENST00000565778 MYH11P35749 1972 aa22.6■■□□□ 1.21
CLN3-219ENST00000565778 PIGRP01833 764 aa22.6■■□□□ 1.21
CLN3-219ENST00000565778 TNFSF9P41273 254 aa22.6■■□□□ 1.21
CLN3-219ENST00000565778 GTF2BQ00403 316 aa22.6■■□□□ 1.21
CLN3-219ENST00000565778 SPAG1Q07617 926 aa22.6■■□□□ 1.21
CLN3-219ENST00000565778 STK38Q15208 465 aa22.6■■□□□ 1.21
CLN3-219ENST00000565778 ZC2HC1CQ53FD0 456 aaPredicted RBP22.6■■□□□ 1.21
CLN3-219ENST00000565778 CCDC73Q6ZRK6 1079 aa22.6■■□□□ 1.21
CLN3-219ENST00000565778 SUGP1Q8IWZ8 645 aaKnown RBP22.6■■□□□ 1.21
CLN3-219ENST00000565778 DDX12PQ92771 950 aa22.6■■□□□ 1.21
CLN3-219ENST00000565778 KIF12Q96FN5 646 aa22.6■■□□□ 1.21
CLN3-219ENST00000565778 ASIC4Q96FT7 647 aa22.6■■□□□ 1.21
CLN3-219ENST00000565778 ZNF396Q96N95 335 aaPredicted RBP22.6■■□□□ 1.21
CLN3-219ENST00000565778 RPF1Q9H9Y2 349 aaKnown RBP22.6■■□□□ 1.21
CLN3-219ENST00000565778 GTF3C3Q9Y5Q9 886 aa22.6■■□□□ 1.21
CLN3-219ENST00000565778 BACE2Q9Y5Z0 518 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms