RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 WDR44Q5JSH3 913 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 C1orf220Q5T0J3 134 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 LMBRD2Q68DH5 695 aaPredicted RBP13.85□□□□□ -0.19
CLK3-214ENST00000564096 CNKSR3Q6P9H4 555 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 TRIM65Q6PJ69 517 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 SV2AQ7L0J3 742 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 CNGA4Q8IV77 575 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 TMEM192Q8IY95 271 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 SMG8Q8ND04 991 aaKnown RBP13.85□□□□□ -0.19
CLK3-214ENST00000564096 ZNF397Q8NF99 534 aaPredicted RBP13.85□□□□□ -0.19
CLK3-214ENST00000564096 BEST2Q8NFU1 509 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 SCLYQ96I15 445 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 FAM81BQ96LP2 452 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 PPP1R9BQ96SB3 815 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 INTS2Q9H0H0 1204 aaKnown RBP13.85□□□□□ -0.19
CLK3-214ENST00000564096 RSAD1Q9HA92 442 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 PLCB1Q9NQ66 1216 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 FAM207AQ9NSI2 230 aaPredicted RBP13.85□□□□□ -0.19
CLK3-214ENST00000564096 SLC38A7Q9NVC3 462 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 ITGA11Q9UKX5 1188 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 UBQLN1Q9UMX0 589 aaKnown RBP13.85□□□□□ -0.19
CLK3-214ENST00000564096 HES2Q9Y543 173 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 HOXA2O43364 376 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 MGEA5O60502 916 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 EFCAB14O75071 495 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 AKAP5P24588 427 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 EPC2Q52LR7 807 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 TDRD10Q5VZ19 366 aaKnown RBP13.84□□□□□ -0.19
CLK3-214ENST00000564096 JADE1Q6IE81 842 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 CACNA2D4Q7Z3S7 1137 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 MRPL10Q7Z7H8 261 aaKnown RBP13.84□□□□□ -0.19
CLK3-214ENST00000564096 ECHDC2Q86YB7 292 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 FMNL3Q8IVF7 1028 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 EFCAB13Q8IY85 973 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 RNF169Q8NCN4 708 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 DBF4BQ8NFT6 615 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 ABHD8Q96I13 439 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 POP1Q99575 1024 aaKnown RBP13.84□□□□□ -0.19
CLK3-214ENST00000564096 CRACR2AQ9BSW2 395 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 RAB20Q9NX57 234 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 SIK3Q9Y2K2 1263 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 COQ4Q9Y3A0 265 aa13.84□□□□□ -0.19
CLK3-214ENST00000564096 A0A1W2PQJ5 194 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 C9IYK1 514 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 EOMESO95936 686 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 ACTN1P12814 892 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 KCNE1P15382 129 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 IBSPP21815 317 aaPredicted RBP13.83□□□□□ -0.2
CLK3-214ENST00000564096 MLH1P40692 756 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 WNT7BP56706 349 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 NCOA4Q13772 614 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 IKBKEQ14164 716 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 MFSD5Q6N075 450 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 GLB1LQ6UWU2 654 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 C15orf39Q6ZRI6 1047 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 TRAPPC11Q7Z392 1133 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 DEFB128Q7Z7B8 93 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 RPUSD2Q8IZ73 545 aaKnown RBP13.83□□□□□ -0.2
CLK3-214ENST00000564096 ABI1Q8IZP0 508 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 URGCPQ8TCY9 931 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 TAS1R2Q8TE23 839 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 ZNF560Q96MR9 790 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 NT5C1BQ96P26 610 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 OSBPL7Q9BZF2 842 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 EDEM3Q9BZQ6 932 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 NUCKS1Q9H1E3 243 aaKnown RBP13.83□□□□□ -0.2
CLK3-214ENST00000564096 ELAC1Q9H777 363 aaKnown RBP13.83□□□□□ -0.2
CLK3-214ENST00000564096 TMEM161AQ9NX61 479 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 CEP72Q9P209 647 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 APEX2Q9UBZ4 518 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 FBXL5Q9UKA1 691 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 LRFN2Q9ULH4 789 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 PTPRJQ12913 1337 aa13.83□□□□□ -0.2
CLK3-214ENST00000564096 TRIM43BA6NCK2 446 aa13.82□□□□□ -0.2
CLK3-214ENST00000564096 AKR1B15C9JRZ8 316 aaPredicted RBP13.82□□□□□ -0.2
CLK3-214ENST00000564096 MFAP3LO75121 409 aa13.82□□□□□ -0.2
CLK3-214ENST00000564096 HLA-DRAP01903 254 aa13.82□□□□□ -0.2
CLK3-214ENST00000564096 C4BPAP04003 597 aaKnown RBP13.82□□□□□ -0.2
CLK3-214ENST00000564096 KRT19P08727 400 aa13.82□□□□□ -0.2
CLK3-214ENST00000564096 ATF7P17544 494 aaPredicted RBP13.82□□□□□ -0.2
CLK3-214ENST00000564096 CYP3A5P20815 502 aa13.82□□□□□ -0.2
CLK3-214ENST00000564096 PON1P27169 355 aa13.82□□□□□ -0.2
CLK3-214ENST00000564096 GRIK3Q13003 919 aa13.82□□□□□ -0.2
CLK3-214ENST00000564096 PPIGQ13427 754 aaKnown RBP eCLIP13.82□□□□□ -0.24e-9■■■□□ 15.8
CLK3-214ENST00000564096 PTPN21Q16825 1174 aa13.82□□□□□ -0.2
CLK3-214ENST00000564096 TSR1Q2NL82 804 aaKnown RBP13.82□□□□□ -0.2
CLK3-214ENST00000564096 XKR4Q5GH76 650 aa13.82□□□□□ -0.2
CLK3-214ENST00000564096 GLRA4Q5JXX5 417 aa13.82□□□□□ -0.2
CLK3-214ENST00000564096 C7orf61Q8IZ16 206 aa13.82□□□□□ -0.2
CLK3-214ENST00000564096 EHBP1Q8NDI1 1231 aa13.82□□□□□ -0.2
CLK3-214ENST00000564096 OR5B17Q8NGF7 314 aa13.82□□□□□ -0.2
CLK3-214ENST00000564096 LINC01599Q8WXQ3 324 aa13.82□□□□□ -0.2
CLK3-214ENST00000564096 TAF4BQ92750 862 aa13.82□□□□□ -0.2
CLK3-214ENST00000564096 TRIM43Q96BQ3 446 aaPredicted RBP13.82□□□□□ -0.2
CLK3-214ENST00000564096 TRIM44Q96DX7 344 aaPredicted RBP13.82□□□□□ -0.2
CLK3-214ENST00000564096 SPAG5Q96R06 1193 aa13.82□□□□□ -0.2
CLK3-214ENST00000564096 LUC7L2Q9Y383 392 aaKnown RBP13.82□□□□□ -0.2
CLK3-214ENST00000564096 KIAA0100Q14667 2235 aaKnown RBP13.82□□□□□ -0.2
CLK3-214ENST00000564096 BRCA2P51587 3418 aa13.81□□□□□ -0.2
CLK3-214ENST00000564096 SMIM28A0A1B0GU29 152 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms