RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 SDK1Q7Z5N4 2213 aa11.52□□□□□ -0.57
SF3B3-204ENST00000563739 GCN1Q92616 2671 aaKnown RBP11.52□□□□□ -0.57
SF3B3-204ENST00000563739 TSC2P49815 1807 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 MYO16Q9Y6X6 1858 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 ASH1LQ9NR48 2969 aaKnown RBP11.51□□□□□ -0.57
SF3B3-204ENST00000563739 CCDC196A0A1B0GTZ2 297 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.51□□□□□ -0.57
SF3B3-204ENST00000563739 ASAP2O43150 1006 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 SLITRK3O94933 977 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 CHRNB1P11230 501 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 SDHBP21912 280 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 RPS6KB1P23443 525 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 OR1D2P34982 312 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 NLRP5P59047 1200 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 CCT2P78371 535 aaKnown RBP11.51□□□□□ -0.57
SF3B3-204ENST00000563739 LIN9Q5TKA1 542 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 RNF20Q5VTR2 975 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 EEF1DP3Q658K8 133 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 CDCA2Q69YH5 1023 aaPredicted RBP11.51□□□□□ -0.57
SF3B3-204ENST00000563739 VITQ6UXI7 678 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 OXER1Q8TDS5 423 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 BSNDQ8WZ55 320 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 ELSPBP1Q96BH3 223 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 ZSWIM3Q96MP5 696 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 JAKMIP1Q96N16 626 aaKnown RBP11.51□□□□□ -0.57
SF3B3-204ENST00000563739 FAM126AQ9BYI3 521 aaPredicted RBP11.51□□□□□ -0.57
SF3B3-204ENST00000563739 GPRC5CQ9NQ84 441 aa11.51□□□□□ -0.57
SF3B3-204ENST00000563739 NDRG2Q9UN36 371 aaKnown RBP11.51□□□□□ -0.57
SF3B3-204ENST00000563739 ITPR1Q14643 2758 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 A0A087WWV3 80 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 ARHGEF37A1IGU5 675 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 TMEM189-UBE2V1I3L0A0 370 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 I3L4J1 428 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 MEFVO15553 781 aaPredicted RBP11.5□□□□□ -0.57
SF3B3-204ENST00000563739 LRP3O75074 770 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 TADA2AO75478 443 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 RECQL4O94761 1208 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 LYPLA2O95372 231 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 SEC24AO95486 1093 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 RETP07949 1114 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 TKTP29401 623 aaKnown RBP11.5□□□□□ -0.57
SF3B3-204ENST00000563739 SOX4Q06945 474 aaPredicted RBP11.5□□□□□ -0.57
SF3B3-204ENST00000563739 PCBP1Q15365 356 aaKnown RBP eCLIP11.5□□□□□ -0.57
SF3B3-204ENST00000563739 XKR9Q5GH70 373 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 BMP2KLQ5H9B9 411 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 FAM78AQ5JUQ0 283 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.5□□□□□ -0.57
SF3B3-204ENST00000563739 ZNF852Q6ZMS4 543 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 Q6ZS52 159 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 TCP11Q8WWU5 503 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 FAM20AQ96MK3 541 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 ASB16Q96NS5 453 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 HSD17B14Q9BPX1 270 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 TMEM121BQ9BXQ6 578 aaPredicted RBP11.5□□□□□ -0.57
SF3B3-204ENST00000563739 CCDC113Q9H0I3 377 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 FZD8Q9H461 694 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 GOLGA2P5Q9HBQ8 144 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 SNTG2Q9NY99 539 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 GMEB2Q9UKD1 530 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 POLIQ9UNA4 740 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 KCNJ14Q9UNX9 436 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 CDY1Q9Y6F8 540 aa11.5□□□□□ -0.57
SF3B3-204ENST00000563739 NBEAQ8NFP9 2946 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 SMG1Q96Q15 3661 aaKnown RBP11.49□□□□□ -0.57
SF3B3-204ENST00000563739 WDR27A2RRH5 827 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 CHURC1-FNTBB4DL54 471 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 XYLBO75191 536 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 PAPSS2O95340 614 aaPredicted RBP11.49□□□□□ -0.57
SF3B3-204ENST00000563739 VNN2O95498 520 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 HSPA4P34932 840 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 BRCC3P46736 316 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 FNTBP49356 437 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 RARRES1P49788 294 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 SHC2P98077 582 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 ROR1Q01973 937 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 KRT32Q14532 448 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 CSRP2Q16527 193 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 N4BP2L1Q5TBK1 243 aaPredicted RBP11.49□□□□□ -0.57
SF3B3-204ENST00000563739 NCAPH2Q6IBW4 605 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 PPP4R3AQ6IN85 833 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 TXNDC11Q6PKC3 985 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 CEP57Q86XR8 500 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 TMEM130Q8N3G9 435 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 TNFRSF25Q93038 417 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 PPP1R10Q96QC0 940 aaKnown RBP11.49□□□□□ -0.57
SF3B3-204ENST00000563739 NELL2Q99435 816 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 POLR3FQ9H1D9 316 aaPredicted RBP11.49□□□□□ -0.57
SF3B3-204ENST00000563739 ZNF334Q9HCZ1 680 aaPredicted RBP11.49□□□□□ -0.57
SF3B3-204ENST00000563739 RBM12Q9NTZ6 932 aaKnown RBP11.49□□□□□ -0.57
SF3B3-204ENST00000563739 GDE1Q9NZC3 331 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 PARP2Q9UGN5 583 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 WASF3Q9UPY6 502 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 MRPS23Q9Y3D9 190 aaKnown RBP11.49□□□□□ -0.57
SF3B3-204ENST00000563739 DMXL2Q8TDJ6 3036 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 OBSL1O75147 1896 aa11.49□□□□□ -0.57
SF3B3-204ENST00000563739 CITO14578 2027 aa11.48□□□□□ -0.57
SF3B3-204ENST00000563739 LAMA5O15230 3695 aa11.48□□□□□ -0.57
SF3B3-204ENST00000563739 DSPP15924 2871 aaKnown RBP11.48□□□□□ -0.57
SF3B3-204ENST00000563739 TBX3O15119 743 aa11.48□□□□□ -0.57
SF3B3-204ENST00000563739 ABLIM3O94929 683 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms