RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 CNTN3Q9P232 1028 aa15.05■□□□□ -0
CLK3-209ENST00000562670 PADI3Q9ULW8 664 aa15.05■□□□□ -0
CLK3-209ENST00000562670 CITO14578 2027 aa15.04■□□□□ -0
CLK3-209ENST00000562670 ZNF623O75123 536 aa15.04■□□□□ -0
CLK3-209ENST00000562670 MYCP01106 439 aaPredicted RBP15.04■□□□□ -0
CLK3-209ENST00000562670 TNNC2P02585 160 aa15.04■□□□□ -0
CLK3-209ENST00000562670 TMEM191BP0C7N4 346 aa15.04■□□□□ -0
CLK3-209ENST00000562670 GHRP10912 638 aa15.04■□□□□ -0
CLK3-209ENST00000562670 SKIP12755 728 aa15.04■□□□□ -0
CLK3-209ENST00000562670 SKILP12757 684 aa15.04■□□□□ -0
CLK3-209ENST00000562670 ACTN1P12814 892 aa15.04■□□□□ -0
CLK3-209ENST00000562670 GCNT1Q02742 428 aa15.04■□□□□ -0
CLK3-209ENST00000562670 TWF2Q6IBS0 349 aaKnown RBP15.04■□□□□ -0
CLK3-209ENST00000562670 ALKAL1Q6UXT8 129 aa15.04■□□□□ -0
CLK3-209ENST00000562670 LRRC8DQ7L1W4 858 aa15.04■□□□□ -0
CLK3-209ENST00000562670 TMTC1Q8IUR5 882 aa15.04■□□□□ -0
CLK3-209ENST00000562670 OR5B17Q8NGF7 314 aa15.04■□□□□ -0
CLK3-209ENST00000562670 CPLX3Q8WVH0 158 aa15.04■□□□□ -0
CLK3-209ENST00000562670 JAKMIP2Q96AA8 810 aa15.04■□□□□ -0
CLK3-209ENST00000562670 STK33Q9BYT3 514 aa15.04■□□□□ -0
CLK3-209ENST00000562670 NXF3Q9H4D5 531 aaKnown RBP15.04■□□□□ -0
CLK3-209ENST00000562670 ZNHIT6Q9NWK9 470 aaKnown RBP15.04■□□□□ -0
CLK3-209ENST00000562670 AIPL1Q9NZN9 384 aa15.04■□□□□ -0
CLK3-209ENST00000562670 IPPQ9Y573 584 aa15.04■□□□□ -0
CLK3-209ENST00000562670 FHOD1Q9Y613 1164 aa15.04■□□□□ -0
CLK3-209ENST00000562670 PDCD11Q14690 1871 aaKnown RBP15.03■□□□□ -0
CLK3-209ENST00000562670 LRRC53A6NM62 1247 aa15.03■□□□□ -0
CLK3-209ENST00000562670 LACTBL1A8MY62 500 aa15.03■□□□□ -0
CLK3-209ENST00000562670 RECQL4O94761 1208 aa15.03■□□□□ -0
CLK3-209ENST00000562670 VNN1O95497 513 aa15.03■□□□□ -0
CLK3-209ENST00000562670 STAU1O95793 577 aaKnown RBP15.03■□□□□ -0
CLK3-209ENST00000562670 HLA-DRAP01903 254 aa15.03■□□□□ -0
CLK3-209ENST00000562670 KCNE1P15382 129 aa15.03■□□□□ -0
CLK3-209ENST00000562670 ZSCAN20P17040 1043 aaPredicted RBP15.03■□□□□ -0
CLK3-209ENST00000562670 ANXA13P27216 316 aa15.03■□□□□ -0
CLK3-209ENST00000562670 CD52P31358 61 aa15.03■□□□□ -0
CLK3-209ENST00000562670 PIK3CAP42336 1068 aa15.03■□□□□ -0
CLK3-209ENST00000562670 OSTNP61366 133 aa15.03■□□□□ -0
CLK3-209ENST00000562670 NCOA4Q13772 614 aa15.03■□□□□ -0
CLK3-209ENST00000562670 MBTPS1Q14703 1052 aa15.03■□□□□ -0
CLK3-209ENST00000562670 TMEM132DQ14C87 1099 aa15.03■□□□□ -0
CLK3-209ENST00000562670 IQCEQ6IPM2 695 aa15.03■□□□□ -0
CLK3-209ENST00000562670 CYP26C1Q6V0L0 522 aa15.03■□□□□ -0
CLK3-209ENST00000562670 TRAPPC11Q7Z392 1133 aa15.03■□□□□ -0
CLK3-209ENST00000562670 MRPL10Q7Z7H8 261 aaKnown RBP15.03■□□□□ -0
CLK3-209ENST00000562670 SMG8Q8ND04 991 aaKnown RBP15.03■□□□□ -0
CLK3-209ENST00000562670 TAF4BQ92750 862 aa15.03■□□□□ -0
CLK3-209ENST00000562670 SEMA4DQ92854 862 aa15.03■□□□□ -0
CLK3-209ENST00000562670 NT5C1BQ96P26 610 aa15.03■□□□□ -0
CLK3-209ENST00000562670 FTHL17Q9BXU8 183 aa15.03■□□□□ -0
CLK3-209ENST00000562670 MTMR12Q9C0I1 747 aa15.03■□□□□ -0
CLK3-209ENST00000562670 VRTNQ9H8Y1 702 aa15.03■□□□□ -0
CLK3-209ENST00000562670 KCND1Q9NSA2 647 aa15.03■□□□□ -0
CLK3-209ENST00000562670 FAM105AQ9NUU6 356 aa15.03■□□□□ -0
CLK3-209ENST00000562670 ITGA11Q9UKX5 1188 aa15.03■□□□□ -0
CLK3-209ENST00000562670 DNAH12Q6ZR08 3092 aa15.02■□□□□ -0
CLK3-209ENST00000562670 DCDC2CA8MYV0 355 aa15.02■□□□□ -0
CLK3-209ENST00000562670 F8VZ95 297 aa15.02■□□□□ -0
CLK3-209ENST00000562670 ASS1P00966 412 aaKnown RBP15.02■□□□□ -0
CLK3-209ENST00000562670 NFICP08651 508 aa15.02■□□□□ -0
CLK3-209ENST00000562670 PRKCIP41743 596 aa15.02■□□□□ -0
CLK3-209ENST00000562670 GOLGA8FQ08AF8 430 aa15.02■□□□□ -0
CLK3-209ENST00000562670 GOLGA8DPQ0D2H9 430 aa15.02■□□□□ -0
CLK3-209ENST00000562670 NFX1Q12986 1120 aaKnown RBP15.02■□□□□ -0
CLK3-209ENST00000562670 BIRC3Q13489 604 aa15.02■□□□□ -0
CLK3-209ENST00000562670 LMBRD2Q68DH5 695 aaPredicted RBP15.02■□□□□ -0
CLK3-209ENST00000562670 JADE1Q6IE81 842 aa15.02■□□□□ -0
CLK3-209ENST00000562670 PHLDB3Q6NSJ2 640 aa15.02■□□□□ -0
CLK3-209ENST00000562670 WDR59Q6PJI9 974 aa15.02■□□□□ -0
CLK3-209ENST00000562670 RRAGAQ7L523 313 aa15.02■□□□□ -0
CLK3-209ENST00000562670 HELQQ8TDG4 1101 aa15.02■□□□□ -0
CLK3-209ENST00000562670 SPAG5Q96R06 1193 aa15.02■□□□□ -0
CLK3-209ENST00000562670 IMPG2Q9BZV3 1241 aa15.02■□□□□ -0
CLK3-209ENST00000562670 FAM124BQ9H5Z6 455 aaPredicted RBP15.02■□□□□ -0
CLK3-209ENST00000562670 C11orf49Q9H6J7 331 aa15.02■□□□□ -0
CLK3-209ENST00000562670 C1orf112Q9NSG2 853 aa15.02■□□□□ -0
CLK3-209ENST00000562670 SNTG2Q9NY99 539 aa15.02■□□□□ -0
CLK3-209ENST00000562670 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.02■□□□□ -0
CLK3-209ENST00000562670 PCDHB2Q9Y5E7 798 aa15.02■□□□□ -0
CLK3-209ENST00000562670 A0A0U1RQF3 1178 aa15.01□□□□□ -0.01
CLK3-209ENST00000562670 SSU72P8A0A1W2PR75 194 aa15.01□□□□□ -0.01
CLK3-209ENST00000562670 INPPL1O15357 1258 aa15.01□□□□□ -0.01
CLK3-209ENST00000562670 XPOTO43592 962 aaKnown RBP15.01□□□□□ -0.01
CLK3-209ENST00000562670 PQBP1O60828 265 aaKnown RBP15.01□□□□□ -0.01
CLK3-209ENST00000562670 TBXAS1P24557 533 aaPredicted RBP15.01□□□□□ -0.01
CLK3-209ENST00000562670 ATICP31939 592 aa15.01□□□□□ -0.01
CLK3-209ENST00000562670 MFAP3P55082 362 aa15.01□□□□□ -0.01
CLK3-209ENST00000562670 NOP14P78316 857 aaKnown RBP15.01□□□□□ -0.01
CLK3-209ENST00000562670 TFAMQ00059 246 aaKnown RBP15.01□□□□□ -0.01
CLK3-209ENST00000562670 APBA1Q02410 837 aa15.01□□□□□ -0.01
CLK3-209ENST00000562670 ZBTB6Q15916 424 aa15.01□□□□□ -0.01
CLK3-209ENST00000562670 WDR44Q5JSH3 913 aa15.01□□□□□ -0.01
CLK3-209ENST00000562670 SFMBT2Q5VUG0 894 aa15.01□□□□□ -0.01
CLK3-209ENST00000562670 E4F1Q66K89 784 aaPredicted RBP15.01□□□□□ -0.01
CLK3-209ENST00000562670 CCDC170Q8IYT3 715 aa15.01□□□□□ -0.01
CLK3-209ENST00000562670 C1orf127Q8N9H9 656 aa15.01□□□□□ -0.01
CLK3-209ENST00000562670 CXorf38Q8TB03 319 aa15.01□□□□□ -0.01
CLK3-209ENST00000562670 KIAA1524Q8TCG1 905 aa15.01□□□□□ -0.01
CLK3-209ENST00000562670 SHC3Q92529 594 aa15.01□□□□□ -0.01
CLK3-209ENST00000562670 APBB2Q92870 758 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms