RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 LACRTQ9GZZ8 138 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 KATNBL1Q9H079 304 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 WNT8AQ9H1J5 351 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 HOMER3Q9NSC5 361 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 CPSF3Q9UKF6 684 aaKnown RBP8.07□□□□□ -1.12
VPS39-204ENST00000561818 ITGA11Q9UKX5 1188 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 ZHX1Q9UKY1 873 aaPredicted RBP8.07□□□□□ -1.12
VPS39-204ENST00000561818 RAB21Q9UL25 225 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 KIAA1257Q9ULG3 409 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 AKT3Q9Y243 479 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 TLL2Q9Y6L7 1015 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 ZSWIM8A7E2V4 1837 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 ARHGEF37A1IGU5 675 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 TMEM150BA6NC51 233 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 ZBTB42B2RXF5 422 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 PGRMC1O00264 195 aaKnown RBP8.06□□□□□ -1.12
VPS39-204ENST00000561818 DDX3XO00571 662 aaKnown RBP eCLIP8.06□□□□□ -1.12
VPS39-204ENST00000561818 CA12O43570 354 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 CAND2O75155 1236 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 PALMO75781 387 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 ITGBL1O95965 494 aaPredicted RBP8.06□□□□□ -1.12
VPS39-204ENST00000561818 ASS1P00966 412 aaKnown RBP8.06□□□□□ -1.12
VPS39-204ENST00000561818 HLA-DRAP01903 254 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 CALB1P05937 261 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 PLEKP08567 350 aaPredicted RBP8.06□□□□□ -1.12
VPS39-204ENST00000561818 PAEPP09466 180 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 FAM163BP0C2L3 166 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 INSRRP14616 1297 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 CYP11B1P15538 503 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 KLRC1P26715 233 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 MARK3P27448 753 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 TNFRSF8P28908 595 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 PNPLA4P41247 253 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 TM4SF4P48230 202 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 NKX3-2P78367 333 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 MBTD1Q05BQ5 628 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 MYO1EQ12965 1108 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 GRIK4Q16099 956 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 ARHGAP44Q17R89 818 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 ACAD10Q6JQN1 1059 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 MTHFD1LQ6UB35 978 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 C17orf99Q6UX52 265 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 TAS1R3Q7RTX0 852 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 DAAM2Q86T65 1068 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 TLK2Q86UE8 772 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 GLYCTKQ8IVS8 523 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 KSR1Q8IVT5 923 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 TPCN2Q8NHX9 752 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 CCDC26Q8TAB7 109 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.06□□□□□ -1.12
VPS39-204ENST00000561818 ZNF526Q8TF50 670 aaPredicted RBP8.06□□□□□ -1.12
VPS39-204ENST00000561818 U2AF1L4Q8WU68 220 aaKnown RBP8.06□□□□□ -1.12
VPS39-204ENST00000561818 AFG1LQ8WV93 481 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 NLRP7Q8WX94 980 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 RSPH1Q8WYR4 309 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 C16orf70Q9BSU1 422 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 KIFC3Q9BVG8 833 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 GPR88Q9GZN0 384 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 SLITRK6Q9H5Y7 841 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 SEPT11Q9NVA2 429 aaKnown RBP8.06□□□□□ -1.12
VPS39-204ENST00000561818 TMEM51Q9NW97 253 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 WDR35Q9P2L0 1181 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 FEZ2Q9UHY8 353 aaPredicted RBP8.06□□□□□ -1.12
VPS39-204ENST00000561818 MTUS1Q9ULD2 1270 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 CAPN6Q9Y6Q1 641 aa8.06□□□□□ -1.12
VPS39-204ENST00000561818 ZNFX1Q9P2E3 1918 aaKnown RBP8.05□□□□□ -1.12
VPS39-204ENST00000561818 MBLAC1A4D2B0 266 aaPredicted RBP8.05□□□□□ -1.12
VPS39-204ENST00000561818 GOLGA8IPA6NC78 632 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 GOLGA8JA6NMD2 632 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 FOXN3O00409 490 aaPredicted RBP8.05□□□□□ -1.12
VPS39-204ENST00000561818 DUSP11O75319 330 aaKnown RBP8.05□□□□□ -1.12
VPS39-204ENST00000561818 LRRN2O75325 713 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 ZNF189O75820 626 aaPredicted RBP8.05□□□□□ -1.12
VPS39-204ENST00000561818 CABYRO75952 493 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 MOCS3O95396 460 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 SNAI1O95863 264 aaPredicted RBP8.05□□□□□ -1.12
VPS39-204ENST00000561818 CD4P01730 458 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 ATP1A1P05023 1023 aaKnown RBP8.05□□□□□ -1.12
VPS39-204ENST00000561818 SRGAP2CP0DJJ0 459 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 KRT5P13647 590 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 EIF4BP23588 611 aaKnown RBP8.05□□□□□ -1.12
VPS39-204ENST00000561818 RDXP35241 583 aaKnown RBP8.05□□□□□ -1.12
VPS39-204ENST00000561818 USP8P40818 1118 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 ADCYAP1R1P41586 468 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 GRM5P41594 1212 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 GALCP54803 685 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 PRMT2P55345 433 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 NLRP11P59045 1033 aaKnown RBP8.05□□□□□ -1.12
VPS39-204ENST00000561818 DLG4P78352 724 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 APBA1Q02410 837 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 CENPCQ03188 943 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 FSTL1Q12841 308 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 NNTQ13423 1086 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 ERCC6LQ2NKX8 1250 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 ZNF699Q32M78 642 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 C1orf220Q5T0J3 134 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 SEL1L2Q5TEA6 688 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 TDRD10Q5VZ19 366 aaKnown RBP8.05□□□□□ -1.12
VPS39-204ENST00000561818 C8orf74Q6P047 294 aa8.05□□□□□ -1.12
VPS39-204ENST00000561818 NFRKBQ6P4R8 1299 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms