RNA–Protein interactions for RNA: ENST00000559996.1

HERC1-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 443 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-206ENST00000559996 VWA3BQ502W6 1294 aa10.18□□□□□ -0.78
HERC1-206ENST00000559996 CBWD3Q5JTY5 395 aa10.18□□□□□ -0.78
HERC1-206ENST00000559996 CBWD5Q5RIA9 395 aa10.18□□□□□ -0.78
HERC1-206ENST00000559996 TMEM240Q5SV17 173 aa10.18□□□□□ -0.78
HERC1-206ENST00000559996 LMBRD2Q68DH5 695 aaPredicted RBP10.18□□□□□ -0.78
HERC1-206ENST00000559996 INTS8Q75QN2 995 aaKnown RBP10.18□□□□□ -0.78
HERC1-206ENST00000559996 TMEM199Q8N511 208 aa10.18□□□□□ -0.78
HERC1-206ENST00000559996 SNX27Q96L92 541 aa10.18□□□□□ -0.78
HERC1-206ENST00000559996 HTATIP2Q9BUP3 242 aa10.18□□□□□ -0.78
HERC1-206ENST00000559996 VPS16Q9H269 839 aa10.18□□□□□ -0.78
HERC1-206ENST00000559996 NDST4Q9H3R1 872 aa10.18□□□□□ -0.78
HERC1-206ENST00000559996 ELAC1Q9H777 363 aaKnown RBP10.18□□□□□ -0.78
HERC1-206ENST00000559996 RPF1Q9H9Y2 349 aaKnown RBP10.18□□□□□ -0.78
HERC1-206ENST00000559996 PLEKHA5Q9HAU0 1116 aa10.18□□□□□ -0.78
HERC1-206ENST00000559996 TAB2Q9NYJ8 693 aa10.18□□□□□ -0.78
HERC1-206ENST00000559996 RBAKQ9NYW8 714 aaPredicted RBP10.18□□□□□ -0.78
HERC1-206ENST00000559996 KLK14Q9P0G3 267 aa10.18□□□□□ -0.78
HERC1-206ENST00000559996 CNTN3Q9P232 1028 aa10.18□□□□□ -0.78
HERC1-206ENST00000559996 ARMCX3Q9UH62 379 aaPredicted RBP10.18□□□□□ -0.78
HERC1-206ENST00000559996 ZMYND8Q9ULU4 1186 aaPredicted RBP10.18□□□□□ -0.78
HERC1-206ENST00000559996 PLAGL2Q9UPG8 496 aa10.18□□□□□ -0.78
HERC1-206ENST00000559996 COL4A6Q14031 1691 aa10.18□□□□□ -0.78
HERC1-206ENST00000559996 SMIM28A0A1B0GU29 152 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 GOLGA6L3A6NEY3 463 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 GOLGA6L19H0YKK7 550 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 VNN1O95497 513 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 CST3P01034 146 aaPredicted RBP10.17□□□□□ -0.78
HERC1-206ENST00000559996 KCNE1P15382 129 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 CDK11BP21127 795 aaKnown RBP10.17□□□□□ -0.78
HERC1-206ENST00000559996 RAB27AP51159 221 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 SOX4Q06945 474 aaPredicted RBP10.17□□□□□ -0.78
HERC1-206ENST00000559996 SPAG1Q07617 926 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 MAN2A1Q16706 1144 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 KYAT1Q16773 422 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 PTPN21Q16825 1174 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 TMEM132AQ24JP5 1023 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 CCDC40Q4G0X9 1142 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 CLLU1OSQ5K130 101 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 JADE1Q6IE81 842 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 ZNF365Q70YC5 407 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 SV2AQ7L0J3 742 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 FAM114A1Q8IWE2 563 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 RPUSD2Q8IZ73 545 aaKnown RBP10.17□□□□□ -0.78
HERC1-206ENST00000559996 SEMA4DQ92854 862 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 CCDC127Q96BQ5 260 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 ZFP42Q96MM3 310 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 PPP1R10Q96QC0 940 aaKnown RBP10.17□□□□□ -0.78
HERC1-206ENST00000559996 CGRRF1Q99675 332 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.17□□□□□ -0.787e-8■■■■■ 27.8
HERC1-206ENST00000559996 XPO4Q9C0E2 1151 aaKnown RBP10.17□□□□□ -0.78
HERC1-206ENST00000559996 TMEM117Q9H0C3 514 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 ASB7Q9H672 318 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 C1orf112Q9NSG2 853 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 IFNKQ9P0W0 207 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 LHX6Q9UPM6 363 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 GIT1Q9Y2X7 761 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 COQ4Q9Y3A0 265 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 CITO14578 2027 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 PTPRSQ13332 1948 aa10.17□□□□□ -0.78
HERC1-206ENST00000559996 ABHD14A-ACY1A0A1B0GW23 586 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 ARL5CA6NH57 179 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 B4GALT3O60512 393 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 IL18RAPO95256 599 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 PFKMP08237 780 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 NFICP08651 508 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 ITGA4P13612 1032 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 MTIF2P46199 727 aaKnown RBP10.16□□□□□ -0.78
HERC1-206ENST00000559996 GCLMP48507 274 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 FMO5P49326 533 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 UBASH3AP57075 661 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 WDR5P61964 334 aaKnown RBP10.16□□□□□ -0.78
HERC1-206ENST00000559996 DEFB103AP81534 67 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 PPIGQ13427 754 aaKnown RBP eCLIP10.16□□□□□ -0.78
HERC1-206ENST00000559996 IKBKEQ14164 716 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 ZACNQ401N2 412 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 RASIP1Q5U651 963 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 TDRD10Q5VZ19 366 aaKnown RBP10.16□□□□□ -0.78
HERC1-206ENST00000559996 CD300LGQ6UXG3 332 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 CREBRFQ8IUR6 639 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 CD302Q8IX05 232 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 DPF3Q92784 378 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 TOP1MTQ969P6 601 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 ZNF689Q96CS4 500 aaPredicted RBP10.16□□□□□ -0.78
HERC1-206ENST00000559996 CASD1Q96PB1 797 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 GAD1Q99259 594 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 CCDC94Q9BW85 323 aaPredicted RBP10.16□□□□□ -0.78
HERC1-206ENST00000559996 APOL6Q9BWW8 343 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 TRIM6Q9C030 488 aaPredicted RBP10.16□□□□□ -0.78
HERC1-206ENST00000559996 RC3H2Q9HBD1 1191 aaKnown RBP10.16□□□□□ -0.78
HERC1-206ENST00000559996 TMEM161AQ9NX61 479 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 CXXC1Q9P0U4 656 aaPredicted RBP10.16□□□□□ -0.78
HERC1-206ENST00000559996 PARP2Q9UGN5 583 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 SIX4Q9UIU6 781 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 SIK3Q9Y2K2 1263 aa10.16□□□□□ -0.78
HERC1-206ENST00000559996 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.16□□□□□ -0.78
HERC1-206ENST00000559996 PDCD11Q14690 1871 aaKnown RBP10.16□□□□□ -0.78
HERC1-206ENST00000559996 RALGAPA2Q2PPJ7 1873 aa10.15□□□□□ -0.78
HERC1-206ENST00000559996 ANO9A1A5B4 782 aa10.15□□□□□ -0.78
HERC1-206ENST00000559996 LGALS16A8MUM7 142 aa10.15□□□□□ -0.78
HERC1-206ENST00000559996 NOL4O94818 638 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms